Magnesium in PDB 3e5z: X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130.

The structure of X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130., PDB code: 3e5z was solved by A.P.Kuzin, M.Abashidze, J.Seetharaman, D.Wang, L.Mao, M.Maglaqui, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, S.N.Tong, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 2.01
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.420, 93.400, 76.990, 90.00, 98.67, 90.00
R / Rfree (%)	19.3 / 22.9

The binding sites of Magnesium atom in the X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130. (pdb code 3e5z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130., PDB code: 3e5z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg297 b:9.8 occ:1.00 OD1 A:ASP221 2.2 32.7 1.0 OD1 A:ASN175 2.2 27.1 1.0 O A:HOH331 2.3 25.4 1.0 OD1 A:ASN118 2.3 24.4 1.0 OE1 A:GLU31 2.5 27.1 1.0 O A:HOH369 2.5 31.5 1.0 O A:HOH348 2.8 28.6 1.0 CG A:ASN175 3.3 24.4 1.0 CG A:ASP221 3.4 27.8 1.0 CG A:ASN118 3.5 22.4 1.0 CD A:GLU31 3.6 27.1 1.0 ND2 A:ASN175 3.7 23.7 1.0 OD2 A:ASP221 3.9 29.1 1.0 OE2 A:GLU31 3.9 27.6 1.0 ND2 A:ASN118 4.0 20.2 1.0 OD2 A:ASP119 4.5 23.6 1.0 O A:ASN118 4.5 23.6 1.0 OD1 A:ASN72 4.6 24.4 1.0 ND2 A:ASN260 4.6 21.4 1.0 CB A:ASP221 4.6 24.5 1.0 ND2 A:ASN72 4.6 23.1 1.0 CB A:ASN175 4.6 23.5 1.0 CB A:ASP119 4.7 23.4 1.0 CB A:ASN118 4.7 22.8 1.0 N A:GLY222 4.7 22.8 1.0 C A:ASN175 4.7 23.8 1.0 C A:ASP221 4.7 23.6 1.0 C A:ASN118 4.8 23.2 1.0 CG A:GLU31 4.9 24.1 1.0 N A:GLY176 4.9 23.6 1.0 O A:ASN175 4.9 23.9 1.0 CG A:ASN72 4.9 23.4 1.0 CG A:ASP119 4.9 24.7 1.0 CA A:ASP221 5.0 24.2 1.0 CA A:ASN175 5.0 23.6 1.0

Magnesium binding site 2 out of 2 in the X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg297 b:11.0 occ:1.00 OD1 B:ASN175 2.2 25.5 1.0 OD1 B:ASP221 2.2 30.2 1.0 O B:HOH328 2.3 25.0 1.0 O B:HOH382 2.4 31.4 1.0 OD1 B:ASN118 2.4 27.6 1.0 O B:HOH418 2.5 38.2 1.0 OE1 B:GLU31 2.5 33.7 1.0 CG B:ASN175 3.3 24.5 1.0 CG B:ASP221 3.3 28.7 1.0 CG B:ASN118 3.5 23.4 1.0 CD B:GLU31 3.5 30.8 1.0 ND2 B:ASN175 3.7 18.8 1.0 OD2 B:ASP221 3.8 30.4 1.0 OE2 B:GLU31 3.8 28.9 1.0 ND2 B:ASN118 4.0 20.2 1.0 ND2 B:ASN72 4.4 24.4 1.0 OD2 B:ASP119 4.5 24.1 1.0 OD1 B:ASN72 4.5 26.8 1.0 O B:ASN118 4.6 21.4 1.0 CB B:ASN175 4.6 23.7 1.0 CB B:ASP119 4.6 21.8 1.0 CB B:ASP221 4.6 24.8 1.0 ND2 B:ASN260 4.6 19.7 1.0 CB B:ASN118 4.7 21.6 1.0 N B:GLY222 4.7 24.0 1.0 C B:ASP221 4.8 24.8 1.0 C B:ASN175 4.8 23.7 1.0 C B:ASN118 4.8 21.8 1.0 CG B:GLU31 4.9 27.7 1.0 CG B:ASN72 4.9 24.9 1.0 CG B:ASP119 4.9 23.5 1.0 O B:ASN175 4.9 23.2 1.0 N B:GLY176 5.0 23.4 1.0 CA B:ASN175 5.0 23.9 1.0 CA B:ASP221 5.0 25.2 1.0

A.P.Kuzin, M.Abashidze, J.Seetharaman, D.Wang, L.Mao, M.Maglaqui, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, S.N.Tong, G.T.Montelione, L.Tong, J.F.Hunt. X-Ray Structure of the Putative Gluconolactonase in Protein Family PF08450. Northeast Structural Genomics Consortium Target DRR130. To Be Published.