Magnesium in PDB 3ea5: KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics

The structure of KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics, PDB code: 3ea5 was solved by J.K.Forwood, J.K.Lonhienne, G.Guncar, M.Stewart, M.Marfori, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	110.850, 127.810, 171.790, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 23.2

The binding sites of Magnesium atom in the KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics (pdb code 3ea5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics, PDB code: 3ea5:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg221 b:43.5 occ:1.00 O A:HOH225 2.0 49.6 1.0 O2B A:GDP220 2.0 42.1 1.0 O A:HOH226 2.0 48.6 1.0 OG1 A:THR24 2.1 58.2 1.0 OG1 A:THR42 2.2 58.2 1.0 O A:HOH260 2.2 53.8 1.0 CB A:THR24 3.0 61.8 1.0 PB A:GDP220 3.2 50.0 1.0 MG A:MG222 3.3 55.6 1.0 CB A:THR42 3.3 64.2 1.0 O3B A:GDP220 3.3 46.3 1.0 N A:THR24 3.8 60.1 1.0 O2A A:GDP220 3.8 46.6 1.0 O A:HOH224 3.8 48.6 1.0 N A:THR42 3.8 61.2 1.0 CA A:THR24 3.9 59.4 1.0 OD2 A:ASP65 4.1 64.3 1.0 CG2 A:THR24 4.1 55.0 1.0 CA A:THR42 4.1 62.6 1.0 O A:HOH239 4.2 52.3 1.0 OD1 A:ASP65 4.2 60.3 1.0 O1B A:GDP220 4.2 46.1 1.0 O3A A:GDP220 4.3 50.9 1.0 O A:HOH223 4.4 64.2 1.0 CG2 A:THR42 4.4 55.2 1.0 PA A:GDP220 4.5 44.7 1.0 CG A:ASP65 4.5 62.4 1.0 O A:VAL40 4.6 61.0 1.0 O1A A:GDP220 4.7 47.6 1.0 O A:THR66 4.8 58.9 1.0 C A:ALA41 4.8 61.5 1.0 CB A:LYS23 4.8 58.5 1.0 C A:LYS23 4.9 61.2 1.0

Magnesium binding site 2 out of 4 in the KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg222 b:55.6 occ:1.00 O A:HOH224 1.3 48.6 1.0 O A:HOH223 1.4 64.2 1.0 O A:HOH225 1.6 49.6 1.0 O3B A:GDP220 1.7 46.3 1.0 PB A:GDP220 3.0 50.0 1.0 MG A:MG221 3.3 43.5 1.0 O2B A:GDP220 3.3 42.1 1.0 O A:HOH227 3.5 62.2 1.0 OH A:TYR39 3.7 69.3 1.0 O A:HOH226 3.7 48.6 1.0 O1B A:GDP220 3.7 46.1 1.0 NZ A:LYS23 3.7 59.2 1.0 N A:GLY68 3.9 64.4 1.0 O A:HOH260 3.9 53.8 1.0 N A:THR42 4.0 61.2 1.0 CA A:GLY19 4.0 58.0 1.0 CE1 A:TYR39 4.0 71.0 1.0 N A:GLY20 4.1 60.9 1.0 O3A A:GDP220 4.2 50.9 1.0 OG1 A:THR42 4.4 58.2 1.0 CZ A:TYR39 4.4 70.8 1.0 CA A:ALA41 4.4 62.2 1.0 CB A:THR42 4.5 64.2 1.0 CE A:LYS23 4.5 60.6 1.0 CA A:GLY68 4.6 65.7 1.0 C A:GLY19 4.6 58.0 1.0 CB A:ALA41 4.7 60.8 1.0 C A:ALA41 4.7 61.5 1.0 CA A:ALA67 4.8 59.0 1.0 C A:ALA67 4.8 65.7 1.0 CA A:THR42 4.9 62.6 1.0 O2A A:GDP220 4.9 46.6 1.0 O A:THR66 4.9 58.9 1.0 N A:GLN69 4.9 64.2 1.0 N A:GLY19 5.0 59.9 1.0

Magnesium binding site 3 out of 4 in the KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg221 b:55.5 occ:1.00 O C:HOH226 1.9 59.1 1.0 OG1 C:THR24 2.0 63.1 1.0 O3B C:GDP220 2.1 53.5 1.0 OG1 C:THR42 2.2 63.8 1.0 O C:HOH228 2.2 50.2 1.0 CB C:THR42 3.1 62.4 1.0 CB C:THR24 3.2 63.3 1.0 MG C:MG222 3.2 58.3 1.0 PB C:GDP220 3.3 56.6 1.0 O1B C:GDP220 3.4 54.9 1.0 OD1 C:ASP65 3.6 73.0 1.0 O C:HOH225 3.7 48.3 1.0 N C:THR24 3.7 65.1 1.0 OD2 C:ASP65 3.9 63.5 1.0 CA C:THR24 4.0 64.1 1.0 N C:THR42 4.0 59.9 1.0 O2B C:GDP220 4.1 54.8 1.0 CG C:ASP65 4.1 68.9 1.0 CG2 C:THR42 4.1 65.2 1.0 CA C:THR42 4.2 63.5 1.0 O2A C:GDP220 4.2 56.6 1.0 CG2 C:THR24 4.3 58.8 1.0 O C:HOH223 4.3 59.5 1.0 O C:THR66 4.4 71.5 1.0 CB C:LYS23 4.4 58.8 1.0 CE C:LYS23 4.5 64.9 1.0 O3A C:GDP220 4.5 62.0 1.0 C C:LYS23 4.7 66.2 1.0 PA C:GDP220 4.8 56.2 1.0 NZ C:LYS23 4.9 62.0 1.0 O1A C:GDP220 4.9 54.6 1.0

Magnesium binding site 4 out of 4 in the KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg222 b:58.3 occ:1.00 O C:HOH223 1.3 59.5 1.0 O C:HOH226 1.5 59.1 1.0 O C:HOH225 1.6 48.3 1.0 O1B C:GDP220 1.7 54.9 1.0 O C:HOH224 2.2 0.5 1.0 PB C:GDP220 3.0 56.6 1.0 MG C:MG221 3.2 55.5 1.0 O3B C:GDP220 3.3 53.5 1.0 O C:HOH227 3.6 65.0 1.0 O C:HOH228 3.7 50.2 1.0 O2B C:GDP220 3.8 54.8 1.0 NZ C:LYS23 3.8 62.0 1.0 N C:GLY68 3.9 69.5 1.0 OH C:TYR39 3.9 73.4 1.0 N C:THR42 4.0 59.9 1.0 CA C:GLY19 4.0 62.2 1.0 CE1 C:TYR39 4.0 75.6 1.0 O3A C:GDP220 4.2 62.0 1.0 N C:GLY20 4.2 66.0 1.0 CB C:THR42 4.3 62.4 1.0 OG1 C:THR42 4.4 63.8 1.0 CE C:LYS23 4.4 64.9 1.0 CA C:ALA41 4.4 61.4 1.0 CZ C:TYR39 4.5 72.6 1.0 CA C:GLY68 4.6 67.5 1.0 C C:GLY19 4.7 63.3 1.0 CA C:ALA67 4.7 65.0 1.0 C C:ALA41 4.7 60.9 1.0 CA C:THR42 4.8 63.5 1.0 O2A C:GDP220 4.8 56.6 1.0 C C:ALA67 4.8 67.5 1.0 N C:GLN69 4.8 67.0 1.0 CB C:ALA41 4.9 59.2 1.0 O C:THR66 4.9 71.5 1.0 N C:GLY19 5.0 56.8 1.0

J.K.Forwood, T.G.Lonhienne, M.Marfori, G.Robin, W.Meng, G.Guncar, S.M.Liu, M.Stewart, B.J.Carroll, B.Kobe. KAP95P Binding Induces the Switch Loops of Rangdp to Adopt the Gtp-Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics. J.Mol.Biol. V. 383 772 2008.
ISSN: ISSN 0022-2836
PubMed: 18708071
DOI: 10.1016/J.JMB.2008.07.090