Atomistry » Magnesium » PDB 3e3z-3ef8 » 3edl
Atomistry »
  Magnesium »
    PDB 3e3z-3ef8 »
      3edl »

Magnesium in PDB 3edl: KINESIN13-Microtubule Ring Complex

Other elements in 3edl:

The structure of KINESIN13-Microtubule Ring Complex also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the KINESIN13-Microtubule Ring Complex (pdb code 3edl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the KINESIN13-Microtubule Ring Complex, PDB code: 3edl:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3edl

Go back to Magnesium Binding Sites List in 3edl
Magnesium binding site 1 out of 3 in the KINESIN13-Microtubule Ring Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KINESIN13-Microtubule Ring Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:18.6
occ:1.00
O1G B:GTP500 2.4 28.7 1.0
CB A:GLN11 3.1 23.6 1.0
O1B B:GTP500 3.2 41.2 1.0
OE2 A:GLU71 3.3 47.9 1.0
PG B:GTP500 3.7 30.0 1.0
O3B B:GTP500 3.7 35.2 1.0
N A:GLN11 3.8 25.1 1.0
OD2 A:ASP69 3.8 33.2 1.0
PB B:GTP500 3.8 41.4 1.0
OD1 A:ASP69 3.9 31.7 1.0
CA A:GLN11 3.9 23.8 1.0
O3A B:GTP500 4.1 39.2 1.0
CG A:GLN11 4.2 24.7 1.0
CD A:GLN11 4.2 29.2 1.0
CG A:ASP69 4.3 34.8 1.0
CB A:GLU71 4.3 46.4 1.0
CG2 A:VAL74 4.3 61.8 1.0
CD A:GLU71 4.4 48.7 1.0
OE1 A:GLN11 4.4 33.8 1.0
O2A B:GTP500 4.4 44.5 1.0
O2G B:GTP500 4.5 35.0 1.0
CB A:ALA99 4.6 35.5 1.0
NE2 A:GLN11 4.7 29.5 1.0
PA B:GTP500 4.8 41.3 1.0
O3G B:GTP500 4.9 32.1 1.0
CG A:GLU71 5.0 49.1 1.0
OD1 B:ASN249 5.0 37.8 1.0
C A:GLY10 5.0 28.3 1.0

Magnesium binding site 2 out of 3 in 3edl

Go back to Magnesium Binding Sites List in 3edl
Magnesium binding site 2 out of 3 in the KINESIN13-Microtubule Ring Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KINESIN13-Microtubule Ring Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:41.5
occ:1.00
OG1 D:THR169 2.1 31.8 1.0
O1B D:ANP500 2.1 31.1 1.0
O D:HOH668 2.1 40.0 1.0
O D:HOH667 2.2 43.4 1.0
O2G D:ANP500 2.3 48.1 1.0
O D:HOH673 2.3 44.6 1.0
PB D:ANP500 3.2 34.1 1.0
CB D:THR169 3.2 34.2 1.0
PG D:ANP500 3.3 54.7 1.0
N3B D:ANP500 3.4 34.1 1.0
N D:THR169 3.8 38.3 1.0
O3G D:ANP500 3.8 48.5 1.0
O3A D:ANP500 3.9 29.2 1.0
CA D:THR169 4.0 33.0 1.0
PA D:ANP500 4.1 44.0 1.0
OD2 D:ASP306 4.1 33.6 1.0
OD1 D:ASP306 4.2 31.3 1.0
CG2 D:THR169 4.3 34.7 1.0
O1A D:ANP500 4.3 43.4 1.0
NH1 D:ARG270 4.4 54.7 1.0
N D:SER282 4.5 84.9 1.0
C D:SER281 4.5 84.9 1.0
O2B D:ANP500 4.5 43.1 1.0
CG D:ASP306 4.6 35.5 1.0
CB D:LYS168 4.6 25.5 1.0
O1G D:ANP500 4.6 59.4 1.0
CA D:SER282 4.7 84.1 1.0
O D:SER281 4.8 84.9 1.0
C D:LYS168 4.8 33.4 1.0
CE D:LYS168 4.9 25.9 1.0
OD1 D:ASN280 4.9 84.9 1.0
CA D:SER281 4.9 84.0 1.0
N D:SER281 4.9 84.9 1.0

Magnesium binding site 3 out of 3 in 3edl

Go back to Magnesium Binding Sites List in 3edl
Magnesium binding site 3 out of 3 in the KINESIN13-Microtubule Ring Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of KINESIN13-Microtubule Ring Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg503

b:83.1
occ:1.00
O3G F:GTP601 1.8 83.1 1.0
O2B F:GTP601 2.0 83.1 1.0
PG F:GTP601 2.8 83.1 1.0
O2G F:GTP601 2.9 83.1 1.0
CA F:GLY144 2.9 83.1 1.0
N F:GLY144 3.1 83.1 1.0
CB F:ALA99 3.2 83.1 1.0
PB F:GTP601 3.2 83.1 1.0
O3B F:GTP601 3.5 83.1 1.0
N F:THR145 3.5 83.1 1.0
OD1 F:ASP98 3.6 83.1 1.0
O3A F:GTP601 3.7 83.1 1.0
C F:GLY144 3.8 83.1 1.0
CG2 F:THR145 3.8 83.1 1.0
N F:ASN101 3.9 83.1 1.0
O1G F:GTP601 4.2 83.1 1.0
CE G:LYS254 4.2 83.1 1.0
CA F:ALA99 4.2 83.1 1.0
NZ G:LYS254 4.3 83.1 1.0
CA F:ASN101 4.3 83.1 1.0
N F:ALA100 4.3 83.1 1.0
C F:GLY143 4.4 83.1 1.0
C F:ALA99 4.4 83.1 1.0
N F:ALA99 4.5 83.1 1.0
O1B F:GTP601 4.5 83.1 1.0
CG F:ASP98 4.7 83.1 1.0
CA F:THR145 4.8 83.1 1.0
C F:ALA100 4.9 83.1 1.0
CB F:THR145 5.0 83.1 1.0
O F:GLY144 5.0 83.1 1.0
OD2 F:ASP98 5.0 83.1 1.0

Reference:

D.Tan, W.J.Rice, H.Sosa. Structure of the KINESIN13-Microtubule Ring Complex. Structure V. 16 1732 2008.
ISSN: ISSN 0969-2126
PubMed: 19000825
DOI: 10.1016/J.STR.2008.08.017
Page generated: Wed Aug 14 13:01:28 2024

Last articles

Cl in 5WBV
Cl in 5WDC
Cl in 5WCT
Cl in 5WCI
Cl in 5WBQ
Cl in 5WB6
Cl in 5WBN
Cl in 5WAL
Cl in 5WB3
Cl in 5WAP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy