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Magnesium in PDB 3edl: KINESIN13-Microtubule Ring Complex

Other elements in 3edl:

The structure of KINESIN13-Microtubule Ring Complex also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the KINESIN13-Microtubule Ring Complex (pdb code 3edl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the KINESIN13-Microtubule Ring Complex, PDB code: 3edl:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3edl

Go back to Magnesium Binding Sites List in 3edl
Magnesium binding site 1 out of 3 in the KINESIN13-Microtubule Ring Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KINESIN13-Microtubule Ring Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:18.6
occ:1.00
O1G B:GTP500 2.4 28.7 1.0
CB A:GLN11 3.1 23.6 1.0
O1B B:GTP500 3.2 41.2 1.0
OE2 A:GLU71 3.3 47.9 1.0
PG B:GTP500 3.7 30.0 1.0
O3B B:GTP500 3.7 35.2 1.0
N A:GLN11 3.8 25.1 1.0
OD2 A:ASP69 3.8 33.2 1.0
PB B:GTP500 3.8 41.4 1.0
OD1 A:ASP69 3.9 31.7 1.0
CA A:GLN11 3.9 23.8 1.0
O3A B:GTP500 4.1 39.2 1.0
CG A:GLN11 4.2 24.7 1.0
CD A:GLN11 4.2 29.2 1.0
CG A:ASP69 4.3 34.8 1.0
CB A:GLU71 4.3 46.4 1.0
CG2 A:VAL74 4.3 61.8 1.0
CD A:GLU71 4.4 48.7 1.0
OE1 A:GLN11 4.4 33.8 1.0
O2A B:GTP500 4.4 44.5 1.0
O2G B:GTP500 4.5 35.0 1.0
CB A:ALA99 4.6 35.5 1.0
NE2 A:GLN11 4.7 29.5 1.0
PA B:GTP500 4.8 41.3 1.0
O3G B:GTP500 4.9 32.1 1.0
CG A:GLU71 5.0 49.1 1.0
OD1 B:ASN249 5.0 37.8 1.0
C A:GLY10 5.0 28.3 1.0

Magnesium binding site 2 out of 3 in 3edl

Go back to Magnesium Binding Sites List in 3edl
Magnesium binding site 2 out of 3 in the KINESIN13-Microtubule Ring Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KINESIN13-Microtubule Ring Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:41.5
occ:1.00
OG1 D:THR169 2.1 31.8 1.0
O1B D:ANP500 2.1 31.1 1.0
O D:HOH668 2.1 40.0 1.0
O D:HOH667 2.2 43.4 1.0
O2G D:ANP500 2.3 48.1 1.0
O D:HOH673 2.3 44.6 1.0
PB D:ANP500 3.2 34.1 1.0
CB D:THR169 3.2 34.2 1.0
PG D:ANP500 3.3 54.7 1.0
N3B D:ANP500 3.4 34.1 1.0
N D:THR169 3.8 38.3 1.0
O3G D:ANP500 3.8 48.5 1.0
O3A D:ANP500 3.9 29.2 1.0
CA D:THR169 4.0 33.0 1.0
PA D:ANP500 4.1 44.0 1.0
OD2 D:ASP306 4.1 33.6 1.0
OD1 D:ASP306 4.2 31.3 1.0
CG2 D:THR169 4.3 34.7 1.0
O1A D:ANP500 4.3 43.4 1.0
NH1 D:ARG270 4.4 54.7 1.0
N D:SER282 4.5 84.9 1.0
C D:SER281 4.5 84.9 1.0
O2B D:ANP500 4.5 43.1 1.0
CG D:ASP306 4.6 35.5 1.0
CB D:LYS168 4.6 25.5 1.0
O1G D:ANP500 4.6 59.4 1.0
CA D:SER282 4.7 84.1 1.0
O D:SER281 4.8 84.9 1.0
C D:LYS168 4.8 33.4 1.0
CE D:LYS168 4.9 25.9 1.0
OD1 D:ASN280 4.9 84.9 1.0
CA D:SER281 4.9 84.0 1.0
N D:SER281 4.9 84.9 1.0

Magnesium binding site 3 out of 3 in 3edl

Go back to Magnesium Binding Sites List in 3edl
Magnesium binding site 3 out of 3 in the KINESIN13-Microtubule Ring Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of KINESIN13-Microtubule Ring Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg503

b:83.1
occ:1.00
O3G F:GTP601 1.8 83.1 1.0
O2B F:GTP601 2.0 83.1 1.0
PG F:GTP601 2.8 83.1 1.0
O2G F:GTP601 2.9 83.1 1.0
CA F:GLY144 2.9 83.1 1.0
N F:GLY144 3.1 83.1 1.0
CB F:ALA99 3.2 83.1 1.0
PB F:GTP601 3.2 83.1 1.0
O3B F:GTP601 3.5 83.1 1.0
N F:THR145 3.5 83.1 1.0
OD1 F:ASP98 3.6 83.1 1.0
O3A F:GTP601 3.7 83.1 1.0
C F:GLY144 3.8 83.1 1.0
CG2 F:THR145 3.8 83.1 1.0
N F:ASN101 3.9 83.1 1.0
O1G F:GTP601 4.2 83.1 1.0
CE G:LYS254 4.2 83.1 1.0
CA F:ALA99 4.2 83.1 1.0
NZ G:LYS254 4.3 83.1 1.0
CA F:ASN101 4.3 83.1 1.0
N F:ALA100 4.3 83.1 1.0
C F:GLY143 4.4 83.1 1.0
C F:ALA99 4.4 83.1 1.0
N F:ALA99 4.5 83.1 1.0
O1B F:GTP601 4.5 83.1 1.0
CG F:ASP98 4.7 83.1 1.0
CA F:THR145 4.8 83.1 1.0
C F:ALA100 4.9 83.1 1.0
CB F:THR145 5.0 83.1 1.0
O F:GLY144 5.0 83.1 1.0
OD2 F:ASP98 5.0 83.1 1.0

Reference:

D.Tan, W.J.Rice, H.Sosa. Structure of the KINESIN13-Microtubule Ring Complex. Structure V. 16 1732 2008.
ISSN: ISSN 0969-2126
PubMed: 19000825
DOI: 10.1016/J.STR.2008.08.017
Page generated: Mon Dec 14 08:06:09 2020

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