Magnesium in PDB 3eni: Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Protein crystallography data
The structure of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum, PDB code: 3eni
was solved by
D.Tronrud,
A.Camara-Artigas,
R.Blankenship,
J.P.Allen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
2.20
|
|
Space group
|
P 43 3 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
169.100,
169.100,
169.100,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
16.3 /
20.7
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
(pdb code 3eni). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the
Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum, PDB code: 3eni:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 1 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg371
b:23.0
occ:1.00
|
MG
|
A:BCL371
|
0.0
|
23.0
|
1.0
|
|
ND
|
A:BCL371
|
2.1
|
22.3
|
1.0
|
|
NB
|
A:BCL371
|
2.1
|
22.8
|
1.0
|
|
NC
|
A:BCL371
|
2.1
|
23.1
|
1.0
|
|
NA
|
A:BCL371
|
2.2
|
22.8
|
1.0
|
|
NE2
|
A:HIS110
|
2.3
|
25.8
|
1.0
|
|
C4D
|
A:BCL371
|
3.0
|
22.5
|
1.0
|
|
C4B
|
A:BCL371
|
3.1
|
22.7
|
1.0
|
|
C1B
|
A:BCL371
|
3.1
|
22.1
|
1.0
|
|
C1C
|
A:BCL371
|
3.1
|
23.9
|
1.0
|
|
C4A
|
A:BCL371
|
3.2
|
22.8
|
1.0
|
|
CE1
|
A:HIS110
|
3.2
|
25.8
|
1.0
|
|
C4C
|
A:BCL371
|
3.2
|
23.6
|
1.0
|
|
C1D
|
A:BCL371
|
3.2
|
21.6
|
1.0
|
|
C1A
|
A:BCL371
|
3.2
|
23.2
|
1.0
|
|
CD2
|
A:HIS110
|
3.3
|
26.6
|
1.0
|
|
CHC
|
A:BCL371
|
3.4
|
23.1
|
1.0
|
|
CHB
|
A:BCL371
|
3.4
|
21.6
|
1.0
|
|
CHA
|
A:BCL371
|
3.5
|
23.3
|
1.0
|
|
CHD
|
A:BCL371
|
3.5
|
22.8
|
1.0
|
|
C2
|
A:BCL371
|
3.8
|
25.0
|
1.0
|
|
C3
|
A:BCL371
|
3.9
|
24.7
|
1.0
|
|
C1
|
A:BCL371
|
4.1
|
25.5
|
1.0
|
|
C3D
|
A:BCL371
|
4.2
|
23.1
|
1.0
|
|
ND1
|
A:HIS110
|
4.3
|
27.3
|
1.0
|
|
C2B
|
A:BCL371
|
4.3
|
22.4
|
1.0
|
|
C2D
|
A:BCL371
|
4.3
|
22.1
|
1.0
|
|
C3B
|
A:BCL371
|
4.3
|
22.5
|
1.0
|
|
C4
|
A:BCL371
|
4.3
|
23.8
|
1.0
|
|
CG
|
A:HIS110
|
4.4
|
25.6
|
1.0
|
|
C2C
|
A:BCL371
|
4.4
|
24.0
|
1.0
|
|
C5
|
A:BCL371
|
4.5
|
23.4
|
1.0
|
|
C3C
|
A:BCL371
|
4.5
|
24.3
|
1.0
|
|
C3A
|
A:BCL371
|
4.5
|
23.1
|
1.0
|
|
C2A
|
A:BCL371
|
4.5
|
23.2
|
1.0
|
|
O2A
|
A:BCL371
|
4.8
|
26.2
|
1.0
|
|
CBD
|
A:BCL371
|
5.0
|
23.1
|
1.0
|
|
Magnesium binding site 2 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 2 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg372
b:20.1
occ:1.00
|
MG
|
A:BCL372
|
0.0
|
20.1
|
1.0
|
|
ND
|
A:BCL372
|
2.0
|
19.9
|
1.0
|
|
O
|
A:HOH1043
|
2.0
|
21.5
|
1.0
|
|
NB
|
A:BCL372
|
2.1
|
19.4
|
1.0
|
|
NC
|
A:BCL372
|
2.2
|
18.7
|
1.0
|
|
NA
|
A:BCL372
|
2.2
|
19.9
|
1.0
|
|
C4D
|
A:BCL372
|
3.0
|
20.8
|
1.0
|
|
C1B
|
A:BCL372
|
3.1
|
19.7
|
1.0
|
|
C4B
|
A:BCL372
|
3.1
|
19.4
|
1.0
|
|
C1D
|
A:BCL372
|
3.1
|
19.4
|
1.0
|
|
C4A
|
A:BCL372
|
3.1
|
19.2
|
1.0
|
|
C1C
|
A:BCL372
|
3.2
|
19.1
|
1.0
|
|
C4C
|
A:BCL372
|
3.2
|
19.2
|
1.0
|
|
C1A
|
A:BCL372
|
3.2
|
20.1
|
1.0
|
|
CHB
|
A:BCL372
|
3.4
|
19.4
|
1.0
|
|
CHC
|
A:BCL372
|
3.4
|
18.9
|
1.0
|
|
CHA
|
A:BCL372
|
3.4
|
19.8
|
1.0
|
|
CHD
|
A:BCL372
|
3.5
|
19.2
|
1.0
|
|
C12
|
A:BCL377
|
3.9
|
31.1
|
1.0
|
|
O
|
A:HOH1044
|
3.9
|
35.9
|
0.8
|
|
O
|
A:HOH1047
|
4.1
|
25.5
|
1.0
|
|
C3D
|
A:BCL372
|
4.2
|
20.3
|
1.0
|
|
C2D
|
A:BCL372
|
4.3
|
19.5
|
1.0
|
|
C2B
|
A:BCL372
|
4.3
|
19.9
|
1.0
|
|
C3B
|
A:BCL372
|
4.3
|
20.4
|
1.0
|
|
C3A
|
A:BCL372
|
4.4
|
18.8
|
1.0
|
|
C11
|
A:BCL377
|
4.5
|
29.5
|
1.0
|
|
C2C
|
A:BCL372
|
4.5
|
18.3
|
1.0
|
|
C2A
|
A:BCL372
|
4.5
|
20.1
|
1.0
|
|
C3C
|
A:BCL372
|
4.5
|
18.6
|
1.0
|
|
CG2
|
A:VAL74
|
4.6
|
23.2
|
1.0
|
|
C13
|
A:BCL377
|
4.8
|
31.8
|
1.0
|
|
C14
|
A:BCL377
|
4.8
|
30.9
|
1.0
|
|
C15
|
A:BCL377
|
4.8
|
32.7
|
0.7
|
|
ND2
|
A:ASN79
|
4.9
|
22.4
|
1.0
|
|
C10
|
A:BCL377
|
4.9
|
27.9
|
1.0
|
|
CBD
|
A:BCL372
|
4.9
|
20.0
|
1.0
|
|
CB
|
A:VAL74
|
4.9
|
23.3
|
1.0
|
|
CG1
|
A:VAL74
|
5.0
|
22.2
|
1.0
|
|
Magnesium binding site 3 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 3 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg373
b:16.8
occ:1.00
|
MG
|
A:BCL373
|
0.0
|
16.8
|
1.0
|
|
ND
|
A:BCL373
|
2.1
|
15.2
|
1.0
|
|
NB
|
A:BCL373
|
2.1
|
18.1
|
1.0
|
|
NC
|
A:BCL373
|
2.1
|
15.9
|
1.0
|
|
NA
|
A:BCL373
|
2.2
|
16.9
|
1.0
|
|
NE2
|
A:HIS297
|
2.2
|
17.3
|
1.0
|
|
C4D
|
A:BCL373
|
3.0
|
15.2
|
1.0
|
|
C4B
|
A:BCL373
|
3.1
|
19.1
|
1.0
|
|
C1C
|
A:BCL373
|
3.1
|
15.5
|
1.0
|
|
C1B
|
A:BCL373
|
3.1
|
17.3
|
1.0
|
|
CE1
|
A:HIS297
|
3.1
|
16.7
|
1.0
|
|
C4A
|
A:BCL373
|
3.2
|
17.2
|
1.0
|
|
C1D
|
A:BCL373
|
3.2
|
13.2
|
1.0
|
|
C4C
|
A:BCL373
|
3.2
|
14.4
|
1.0
|
|
CD2
|
A:HIS297
|
3.2
|
18.0
|
1.0
|
|
C1A
|
A:BCL373
|
3.2
|
16.6
|
1.0
|
|
CHC
|
A:BCL373
|
3.4
|
16.8
|
1.0
|
|
CHB
|
A:BCL373
|
3.5
|
16.9
|
1.0
|
|
CHA
|
A:BCL373
|
3.5
|
15.9
|
1.0
|
|
CHD
|
A:BCL373
|
3.5
|
13.8
|
1.0
|
|
C3D
|
A:BCL373
|
4.2
|
14.7
|
1.0
|
|
ND1
|
A:HIS297
|
4.3
|
16.9
|
1.0
|
|
CG
|
A:HIS297
|
4.3
|
16.7
|
1.0
|
|
C2B
|
A:BCL373
|
4.3
|
17.2
|
1.0
|
|
C3B
|
A:BCL373
|
4.3
|
18.4
|
1.0
|
|
C2D
|
A:BCL373
|
4.4
|
13.2
|
1.0
|
|
C2C
|
A:BCL373
|
4.4
|
14.7
|
1.0
|
|
CBC
|
A:BCL374
|
4.4
|
18.0
|
1.0
|
|
C3C
|
A:BCL373
|
4.5
|
14.7
|
1.0
|
|
C3A
|
A:BCL373
|
4.5
|
16.9
|
1.0
|
|
C2A
|
A:BCL373
|
4.5
|
15.6
|
1.0
|
|
CD1
|
A:ILE264
|
4.8
|
27.2
|
1.0
|
|
CBD
|
A:BCL373
|
5.0
|
16.6
|
1.0
|
|
Magnesium binding site 4 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 4 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg374
b:18.5
occ:1.00
|
MG
|
A:BCL374
|
0.0
|
18.5
|
1.0
|
|
ND
|
A:BCL374
|
2.0
|
18.1
|
1.0
|
|
NB
|
A:BCL374
|
2.1
|
17.7
|
1.0
|
|
NC
|
A:BCL374
|
2.1
|
18.4
|
1.0
|
|
NE2
|
A:HIS289
|
2.2
|
18.4
|
1.0
|
|
NA
|
A:BCL374
|
2.2
|
17.4
|
1.0
|
|
C4D
|
A:BCL374
|
3.0
|
18.2
|
1.0
|
|
CE1
|
A:HIS289
|
3.1
|
18.4
|
1.0
|
|
C4B
|
A:BCL374
|
3.1
|
17.9
|
1.0
|
|
C1B
|
A:BCL374
|
3.1
|
17.3
|
1.0
|
|
C1C
|
A:BCL374
|
3.1
|
17.4
|
1.0
|
|
CD2
|
A:HIS289
|
3.2
|
19.4
|
1.0
|
|
C1D
|
A:BCL374
|
3.2
|
18.3
|
1.0
|
|
C4A
|
A:BCL374
|
3.2
|
17.2
|
1.0
|
|
C4C
|
A:BCL374
|
3.2
|
18.8
|
1.0
|
|
C1A
|
A:BCL374
|
3.2
|
17.9
|
1.0
|
|
CHC
|
A:BCL374
|
3.4
|
16.0
|
1.0
|
|
CHB
|
A:BCL374
|
3.4
|
16.6
|
1.0
|
|
CHA
|
A:BCL374
|
3.5
|
18.4
|
1.0
|
|
CHD
|
A:BCL374
|
3.5
|
18.2
|
1.0
|
|
ND1
|
A:HIS289
|
4.2
|
19.3
|
1.0
|
|
C3D
|
A:BCL374
|
4.2
|
17.9
|
1.0
|
|
CG
|
A:HIS289
|
4.3
|
18.4
|
1.0
|
|
C4
|
A:BCL374
|
4.3
|
24.7
|
1.0
|
|
C2B
|
A:BCL374
|
4.3
|
18.3
|
1.0
|
|
C3B
|
A:BCL374
|
4.3
|
19.1
|
1.0
|
|
C2D
|
A:BCL374
|
4.3
|
17.2
|
1.0
|
|
C3A
|
A:BCL374
|
4.5
|
17.5
|
1.0
|
|
C2C
|
A:BCL374
|
4.5
|
17.6
|
1.0
|
|
C3C
|
A:BCL374
|
4.5
|
18.6
|
1.0
|
|
C2A
|
A:BCL374
|
4.5
|
19.3
|
1.0
|
|
O2A
|
A:BCL374
|
4.6
|
24.5
|
1.0
|
|
C1
|
A:BCL374
|
4.7
|
24.3
|
1.0
|
|
C3
|
A:BCL374
|
4.7
|
25.4
|
1.0
|
|
C2
|
A:BCL374
|
4.9
|
25.7
|
1.0
|
|
CBD
|
A:BCL374
|
5.0
|
19.9
|
1.0
|
|
CD2
|
A:LEU294
|
5.0
|
16.2
|
1.0
|
|
Magnesium binding site 5 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 5 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg375
b:20.6
occ:1.00
|
MG
|
A:BCL375
|
0.0
|
20.6
|
1.0
|
|
O
|
A:LEU241
|
2.0
|
22.4
|
1.0
|
|
ND
|
A:BCL375
|
2.0
|
20.5
|
1.0
|
|
NB
|
A:BCL375
|
2.1
|
22.9
|
1.0
|
|
NC
|
A:BCL375
|
2.2
|
21.3
|
1.0
|
|
NA
|
A:BCL375
|
2.2
|
21.2
|
1.0
|
|
C4D
|
A:BCL375
|
3.0
|
20.5
|
1.0
|
|
C4B
|
A:BCL375
|
3.1
|
22.8
|
1.0
|
|
C1B
|
A:BCL375
|
3.1
|
23.3
|
1.0
|
|
C
|
A:LEU241
|
3.1
|
23.2
|
1.0
|
|
C1C
|
A:BCL375
|
3.2
|
22.4
|
1.0
|
|
C4A
|
A:BCL375
|
3.2
|
21.7
|
1.0
|
|
C1D
|
A:BCL375
|
3.2
|
21.3
|
1.0
|
|
C4C
|
A:BCL375
|
3.2
|
21.6
|
1.0
|
|
C1A
|
A:BCL375
|
3.2
|
20.8
|
1.0
|
|
CHC
|
A:BCL375
|
3.4
|
22.4
|
1.0
|
|
CHB
|
A:BCL375
|
3.4
|
22.4
|
1.0
|
|
CHA
|
A:BCL375
|
3.5
|
21.1
|
1.0
|
|
CHD
|
A:BCL375
|
3.5
|
20.4
|
1.0
|
|
CA
|
A:LEU241
|
3.8
|
18.8
|
1.0
|
|
CB
|
A:LEU241
|
3.9
|
18.5
|
1.0
|
|
N
|
A:PHE242
|
4.2
|
21.6
|
1.0
|
|
C3D
|
A:BCL375
|
4.2
|
21.8
|
1.0
|
|
C12
|
A:BCL376
|
4.3
|
34.8
|
1.0
|
|
C2B
|
A:BCL375
|
4.3
|
23.2
|
1.0
|
|
CD1
|
A:LEU241
|
4.3
|
19.6
|
1.0
|
|
C3B
|
A:BCL375
|
4.3
|
23.8
|
1.0
|
|
C2D
|
A:BCL375
|
4.3
|
21.1
|
1.0
|
|
C3A
|
A:BCL375
|
4.4
|
20.9
|
1.0
|
|
C2C
|
A:BCL375
|
4.5
|
22.8
|
1.0
|
|
C2A
|
A:BCL375
|
4.5
|
20.5
|
1.0
|
|
C3C
|
A:BCL375
|
4.5
|
22.6
|
1.0
|
|
CA
|
A:PHE242
|
4.6
|
21.8
|
1.0
|
|
CG
|
A:LEU241
|
4.7
|
21.4
|
1.0
|
|
CD
|
A:PRO243
|
4.8
|
20.5
|
1.0
|
|
CBD
|
A:BCL375
|
5.0
|
22.2
|
1.0
|
|
CMA
|
A:BCL375
|
5.0
|
20.9
|
1.0
|
|
C16
|
A:BCL376
|
5.0
|
35.1
|
1.0
|
|
Magnesium binding site 6 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 6 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg376
b:20.7
occ:1.00
|
MG
|
A:BCL376
|
0.0
|
20.7
|
1.0
|
|
ND
|
A:BCL376
|
2.1
|
20.7
|
1.0
|
|
NB
|
A:BCL376
|
2.1
|
20.5
|
1.0
|
|
NC
|
A:BCL376
|
2.2
|
19.6
|
0.5
|
|
NC
|
A:BCL376
|
2.2
|
19.9
|
0.5
|
|
NE2
|
A:HIS145
|
2.2
|
20.8
|
1.0
|
|
NA
|
A:BCL376
|
2.2
|
22.3
|
1.0
|
|
C4D
|
A:BCL376
|
3.0
|
21.5
|
0.6
|
|
C4D
|
A:BCL376
|
3.0
|
20.1
|
0.4
|
|
C1B
|
A:BCL376
|
3.1
|
21.0
|
1.0
|
|
C4B
|
A:BCL376
|
3.1
|
19.9
|
1.0
|
|
CD2
|
A:HIS145
|
3.1
|
21.5
|
1.0
|
|
C1C
|
A:BCL376
|
3.1
|
19.0
|
0.5
|
|
C1C
|
A:BCL376
|
3.2
|
19.4
|
0.5
|
|
C4C
|
A:BCL376
|
3.2
|
19.3
|
0.5
|
|
C4A
|
A:BCL376
|
3.2
|
21.7
|
1.0
|
|
C1D
|
A:BCL376
|
3.2
|
19.9
|
1.0
|
|
CE1
|
A:HIS145
|
3.2
|
20.1
|
1.0
|
|
C4C
|
A:BCL376
|
3.2
|
20.0
|
0.5
|
|
C1A
|
A:BCL376
|
3.2
|
22.4
|
1.0
|
|
CHC
|
A:BCL376
|
3.4
|
19.0
|
1.0
|
|
CHB
|
A:BCL376
|
3.4
|
19.6
|
1.0
|
|
CHA
|
A:BCL376
|
3.5
|
22.8
|
0.6
|
|
CHA
|
A:BCL376
|
3.5
|
20.4
|
0.4
|
|
CHD
|
A:BCL376
|
3.5
|
19.6
|
1.0
|
|
C18
|
A:BCL373
|
3.8
|
27.5
|
0.5
|
|
C19
|
A:BCL373
|
4.2
|
27.3
|
0.5
|
|
C3D
|
A:BCL376
|
4.3
|
21.6
|
0.6
|
|
C3D
|
A:BCL376
|
4.3
|
19.9
|
0.4
|
|
ND1
|
A:HIS145
|
4.3
|
20.5
|
1.0
|
|
C2B
|
A:BCL376
|
4.3
|
21.3
|
1.0
|
|
CG
|
A:HIS145
|
4.3
|
20.3
|
1.0
|
|
C3B
|
A:BCL376
|
4.3
|
20.3
|
1.0
|
|
C17
|
A:BCL373
|
4.3
|
28.3
|
0.5
|
|
C2D
|
A:BCL376
|
4.4
|
20.2
|
1.0
|
|
C19
|
A:BCL373
|
4.4
|
18.1
|
0.5
|
|
C2C
|
A:BCL376
|
4.5
|
19.3
|
0.5
|
|
C2C
|
A:BCL376
|
4.5
|
18.5
|
0.5
|
|
C3C
|
A:BCL376
|
4.5
|
18.2
|
0.5
|
|
C3A
|
A:BCL376
|
4.5
|
21.8
|
1.0
|
|
C3C
|
A:BCL376
|
4.5
|
19.8
|
0.5
|
|
C2A
|
A:BCL376
|
4.6
|
23.9
|
1.0
|
|
CG2
|
A:VAL118
|
4.8
|
22.3
|
1.0
|
|
C20
|
A:BCL373
|
4.9
|
26.6
|
0.5
|
|
C17
|
A:BCL373
|
4.9
|
19.6
|
0.5
|
|
CBD
|
A:BCL376
|
5.0
|
18.3
|
0.4
|
|
CBD
|
A:BCL376
|
5.0
|
24.0
|
0.6
|
|
Magnesium binding site 7 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 7 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg377
b:15.7
occ:1.00
|
MG
|
A:BCL377
|
0.0
|
15.7
|
1.0
|
|
ND
|
A:BCL377
|
2.0
|
15.4
|
1.0
|
|
NB
|
A:BCL377
|
2.1
|
14.8
|
1.0
|
|
NC
|
A:BCL377
|
2.2
|
16.2
|
1.0
|
|
NA
|
A:BCL377
|
2.2
|
16.3
|
1.0
|
|
ND1
|
A:HIS296
|
2.2
|
16.1
|
1.0
|
|
C4D
|
A:BCL377
|
3.0
|
16.0
|
1.0
|
|
C4B
|
A:BCL377
|
3.1
|
16.3
|
1.0
|
|
C1B
|
A:BCL377
|
3.1
|
14.9
|
1.0
|
|
C1C
|
A:BCL377
|
3.1
|
15.5
|
0.5
|
|
CE1
|
A:HIS296
|
3.1
|
15.5
|
1.0
|
|
C1C
|
A:BCL377
|
3.1
|
15.5
|
0.6
|
|
C4A
|
A:BCL377
|
3.2
|
16.3
|
1.0
|
|
C1D
|
A:BCL377
|
3.2
|
15.2
|
1.0
|
|
C4C
|
A:BCL377
|
3.2
|
15.9
|
0.5
|
|
C4C
|
A:BCL377
|
3.2
|
16.0
|
0.6
|
|
C1A
|
A:BCL377
|
3.2
|
17.4
|
1.0
|
|
CG
|
A:HIS296
|
3.2
|
15.7
|
1.0
|
|
CHC
|
A:BCL377
|
3.4
|
15.6
|
1.0
|
|
CHB
|
A:BCL377
|
3.4
|
15.1
|
1.0
|
|
CHA
|
A:BCL377
|
3.5
|
16.4
|
1.0
|
|
CHD
|
A:BCL377
|
3.5
|
15.2
|
1.0
|
|
CB
|
A:HIS296
|
3.6
|
13.4
|
1.0
|
|
C4
|
A:BCL373
|
3.8
|
19.9
|
1.0
|
|
C2B
|
A:BCL377
|
4.2
|
16.0
|
1.0
|
|
C3B
|
A:BCL377
|
4.3
|
15.8
|
0.5
|
|
C3B
|
A:BCL377
|
4.3
|
16.1
|
0.5
|
|
C3D
|
A:BCL377
|
4.3
|
16.4
|
1.0
|
|
NE2
|
A:HIS296
|
4.3
|
15.9
|
1.0
|
|
CD2
|
A:HIS296
|
4.4
|
16.0
|
1.0
|
|
C2D
|
A:BCL377
|
4.4
|
14.8
|
1.0
|
|
C2C
|
A:BCL377
|
4.4
|
15.2
|
0.5
|
|
C2C
|
A:BCL377
|
4.5
|
15.3
|
0.6
|
|
C3C
|
A:BCL377
|
4.5
|
15.5
|
0.5
|
|
C3A
|
A:BCL377
|
4.5
|
16.5
|
1.0
|
|
C3C
|
A:BCL377
|
4.5
|
15.6
|
0.6
|
|
C2A
|
A:BCL377
|
4.5
|
17.5
|
1.0
|
|
C3
|
A:BCL373
|
4.6
|
21.6
|
1.0
|
|
CG2
|
A:ILE292
|
4.6
|
13.4
|
1.0
|
|
C1
|
A:BCL373
|
4.9
|
21.2
|
1.0
|
|
CBD
|
A:BCL377
|
5.0
|
17.2
|
1.0
|
|
Magnesium binding site 8 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 8 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg378
b:82.4
occ:1.00
|
MG
|
A:BCL378
|
0.0
|
82.4
|
1.0
|
|
O
|
A:TYR123
|
2.0
|
29.7
|
1.0
|
|
ND
|
A:BCL378
|
2.0
|
81.3
|
1.0
|
|
NB
|
A:BCL378
|
2.1
|
82.1
|
1.0
|
|
NC
|
A:BCL378
|
2.2
|
81.3
|
1.0
|
|
NA
|
A:BCL378
|
2.2
|
83.6
|
1.0
|
|
C4D
|
A:BCL378
|
3.0
|
81.1
|
1.0
|
|
C1B
|
A:BCL378
|
3.0
|
82.9
|
1.0
|
|
C4B
|
A:BCL378
|
3.1
|
81.3
|
1.0
|
|
C1C
|
A:BCL378
|
3.1
|
80.7
|
1.0
|
|
C4A
|
A:BCL378
|
3.1
|
84.4
|
1.0
|
|
C1D
|
A:BCL378
|
3.2
|
80.7
|
1.0
|
|
C4C
|
A:BCL378
|
3.2
|
80.6
|
1.0
|
|
C1A
|
A:BCL378
|
3.2
|
83.6
|
1.0
|
|
C
|
A:TYR123
|
3.2
|
29.5
|
1.0
|
|
CHB
|
A:BCL378
|
3.4
|
83.8
|
1.0
|
|
CHC
|
A:BCL378
|
3.4
|
81.0
|
1.0
|
|
CHA
|
A:BCL378
|
3.5
|
81.9
|
1.0
|
|
CHD
|
A:BCL378
|
3.5
|
80.8
|
1.0
|
|
N
|
A:TYR124
|
4.1
|
26.3
|
1.0
|
|
CA
|
A:TYR124
|
4.2
|
27.3
|
1.0
|
|
CA
|
A:TYR123
|
4.2
|
24.3
|
1.0
|
|
C2B
|
A:BCL378
|
4.2
|
82.5
|
1.0
|
|
C3D
|
A:BCL378
|
4.2
|
80.1
|
1.0
|
|
C3B
|
A:BCL378
|
4.2
|
81.2
|
1.0
|
|
C2D
|
A:BCL378
|
4.3
|
79.8
|
1.0
|
|
C3C
|
A:BCL378
|
4.4
|
80.0
|
1.0
|
|
C2C
|
A:BCL378
|
4.4
|
80.0
|
1.0
|
|
C3A
|
A:BCL378
|
4.5
|
85.2
|
1.0
|
|
CB
|
A:TYR124
|
4.5
|
29.1
|
1.0
|
|
C2A
|
A:BCL378
|
4.5
|
85.2
|
1.0
|
|
CB
|
A:TYR123
|
4.6
|
23.3
|
1.0
|
|
CBD
|
A:BCL378
|
4.9
|
80.8
|
1.0
|
|
Magnesium binding site 9 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 9 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg371
b:23.9
occ:1.00
|
MG
|
C:BCL371
|
0.0
|
23.9
|
1.0
|
|
ND
|
C:BCL371
|
2.1
|
23.4
|
1.0
|
|
NB
|
C:BCL371
|
2.1
|
24.4
|
1.0
|
|
NC
|
C:BCL371
|
2.1
|
24.5
|
1.0
|
|
NA
|
C:BCL371
|
2.2
|
23.6
|
1.0
|
|
NE2
|
C:HIS110
|
2.3
|
25.5
|
1.0
|
|
C4D
|
C:BCL371
|
3.0
|
24.1
|
1.0
|
|
C4B
|
C:BCL371
|
3.1
|
24.1
|
1.0
|
|
C1C
|
C:BCL371
|
3.1
|
25.0
|
1.0
|
|
C1B
|
C:BCL371
|
3.1
|
23.6
|
1.0
|
|
CE1
|
C:HIS110
|
3.2
|
26.1
|
1.0
|
|
C1D
|
C:BCL371
|
3.2
|
23.2
|
1.0
|
|
C4A
|
C:BCL371
|
3.2
|
24.1
|
1.0
|
|
C4C
|
C:BCL371
|
3.2
|
24.8
|
1.0
|
|
C1A
|
C:BCL371
|
3.3
|
24.8
|
1.0
|
|
CD2
|
C:HIS110
|
3.3
|
26.6
|
1.0
|
|
CHC
|
C:BCL371
|
3.4
|
24.4
|
1.0
|
|
CHB
|
C:BCL371
|
3.4
|
23.0
|
1.0
|
|
CHA
|
C:BCL371
|
3.5
|
25.0
|
1.0
|
|
CHD
|
C:BCL371
|
3.5
|
23.9
|
1.0
|
|
C2
|
C:BCL371
|
3.8
|
26.5
|
1.0
|
|
C3
|
C:BCL371
|
3.9
|
26.4
|
1.0
|
|
C1
|
C:BCL371
|
4.1
|
27.1
|
1.0
|
|
C3D
|
C:BCL371
|
4.2
|
24.4
|
1.0
|
|
ND1
|
C:HIS110
|
4.3
|
27.3
|
1.0
|
|
C2D
|
C:BCL371
|
4.3
|
23.5
|
1.0
|
|
C2B
|
C:BCL371
|
4.3
|
23.9
|
1.0
|
|
C3B
|
C:BCL371
|
4.4
|
24.0
|
1.0
|
|
C4
|
C:BCL371
|
4.4
|
25.4
|
1.0
|
|
CG
|
C:HIS110
|
4.4
|
25.9
|
1.0
|
|
C2C
|
C:BCL371
|
4.4
|
25.1
|
1.0
|
|
C5
|
C:BCL371
|
4.5
|
24.6
|
1.0
|
|
C3C
|
C:BCL371
|
4.5
|
25.7
|
1.0
|
|
C3A
|
C:BCL371
|
4.5
|
24.5
|
1.0
|
|
C2A
|
C:BCL371
|
4.5
|
24.6
|
1.0
|
|
O2A
|
C:BCL371
|
4.8
|
28.0
|
1.0
|
|
CBD
|
C:BCL371
|
5.0
|
24.5
|
1.0
|
|
Magnesium binding site 10 out
of 16 in 3eni
Go back to
Magnesium Binding Sites List in 3eni
Magnesium binding site 10 out
of 16 in the Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of the Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg372
b:21.1
occ:1.00
|
MG
|
C:BCL372
|
0.0
|
21.1
|
1.0
|
|
O
|
C:HOH1043
|
2.0
|
22.9
|
1.0
|
|
ND
|
C:BCL372
|
2.0
|
21.1
|
1.0
|
|
NB
|
C:BCL372
|
2.1
|
20.4
|
1.0
|
|
NC
|
C:BCL372
|
2.1
|
20.1
|
1.0
|
|
NA
|
C:BCL372
|
2.2
|
21.3
|
1.0
|
|
C4D
|
C:BCL372
|
3.0
|
21.5
|
1.0
|
|
C1B
|
C:BCL372
|
3.1
|
20.6
|
1.0
|
|
C4B
|
C:BCL372
|
3.1
|
20.7
|
1.0
|
|
C1C
|
C:BCL372
|
3.1
|
20.6
|
1.0
|
|
C1D
|
C:BCL372
|
3.2
|
20.4
|
1.0
|
|
C4A
|
C:BCL372
|
3.2
|
20.5
|
1.0
|
|
C4C
|
C:BCL372
|
3.2
|
20.1
|
1.0
|
|
C1A
|
C:BCL372
|
3.2
|
21.3
|
1.0
|
|
CHB
|
C:BCL372
|
3.4
|
20.4
|
1.0
|
|
CHC
|
C:BCL372
|
3.4
|
20.3
|
1.0
|
|
CHA
|
C:BCL372
|
3.5
|
20.9
|
1.0
|
|
CHD
|
C:BCL372
|
3.5
|
19.6
|
1.0
|
|
O
|
C:HOH1044
|
3.9
|
37.3
|
0.8
|
|
C12
|
C:BCL377
|
4.0
|
32.5
|
1.0
|
|
O
|
C:HOH1047
|
4.1
|
27.1
|
1.0
|
|
C3D
|
C:BCL372
|
4.2
|
21.8
|
1.0
|
|
C2B
|
C:BCL372
|
4.3
|
21.3
|
1.0
|
|
C2D
|
C:BCL372
|
4.3
|
20.9
|
1.0
|
|
C3B
|
C:BCL372
|
4.3
|
21.8
|
1.0
|
|
C2C
|
C:BCL372
|
4.5
|
19.0
|
1.0
|
|
CG2
|
C:VAL74
|
4.5
|
23.3
|
1.0
|
|
C3A
|
C:BCL372
|
4.5
|
20.4
|
1.0
|
|
C3C
|
C:BCL372
|
4.5
|
19.8
|
1.0
|
|
C11
|
C:BCL377
|
4.5
|
30.9
|
1.0
|
|
C2A
|
C:BCL372
|
4.5
|
21.5
|
1.0
|
|
C15
|
C:BCL377
|
4.8
|
33.9
|
0.7
|
|
C13
|
C:BCL377
|
4.8
|
33.0
|
1.0
|
|
C14
|
C:BCL377
|
4.8
|
32.2
|
1.0
|
|
CB
|
C:VAL74
|
4.9
|
23.6
|
1.0
|
|
CG1
|
C:VAL74
|
4.9
|
21.8
|
1.0
|
|
C10
|
C:BCL377
|
4.9
|
29.0
|
1.0
|
|
ND2
|
C:ASN79
|
5.0
|
23.4
|
1.0
|
|
CBD
|
C:BCL372
|
5.0
|
21.1
|
1.0
|
|
Reference:
D.E.Tronrud,
J.Wen,
L.Gay,
R.E.Blankenship.
The Structural Basis For the Difference in Absorbance Spectra For the Fmo Antenna Protein From Various Green Sulfur Bacteria. Photosynth.Res. V. 100 79 2009.
ISSN: ISSN 0166-8595
PubMed: 19437128
DOI: 10.1007/S11120-009-9430-6
Page generated: Wed Aug 14 13:07:59 2024
|
