Atomistry » Magnesium » PDB 3es7-3f2q » 3ez3
Atomistry »
  Magnesium »
    PDB 3es7-3f2q »
      3ez3 »

Magnesium in PDB 3ez3: Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound

Protein crystallography data

The structure of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound, PDB code: 3ez3 was solved by A.K.Wernimont, J.Lew, Y.Zhao, I.Kozieradzki, D.Cossar, M.Schapira, A.Bochkarev, C.H.Arrowsmith, C.Bountra, J.Weigelt, A.M.Edwards, R.Hui, J.D.Artz, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.43 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 111.266, 109.696, 139.529, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 29.1

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound (pdb code 3ez3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound, PDB code: 3ez3:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 1 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1102

b:9.1
occ:1.00
OD2 A:ASP126 1.9 18.9 1.0
O12 A:ZOL397 1.9 17.6 1.0
O17 A:ZOL397 2.0 20.5 1.0
OD2 A:ASP130 2.1 25.6 1.0
O A:HOH1164 2.1 4.9 1.0
O A:HOH1142 2.3 10.9 1.0
CG A:ASP126 2.7 22.1 1.0
OD1 A:ASP126 2.7 19.9 1.0
MG A:MG1103 3.0 18.8 1.0
P14 A:ZOL397 3.1 18.1 1.0
P9 A:ZOL397 3.2 18.3 1.0
CG A:ASP130 3.2 25.5 1.0
C8 A:ZOL397 3.5 16.8 1.0
C7 A:ZOL397 3.7 15.6 1.0
CB A:ASP130 3.8 25.3 1.0
O16 A:ZOL397 3.9 19.7 1.0
O11 A:ZOL397 4.0 16.8 1.0
O A:HOH1162 4.0 25.7 1.0
O A:HOH1155 4.1 16.7 1.0
CB A:ASP126 4.1 22.7 1.0
OD1 A:ASP130 4.3 25.4 1.0
O A:HOH1161 4.3 22.1 1.0
O A:ASP126 4.3 22.1 1.0
O10 A:ZOL397 4.3 19.7 1.0
NH1 A:ARG135 4.4 23.8 1.0
OD1 A:ASP127 4.4 17.3 1.0
O15 A:ZOL397 4.4 16.0 1.0
C A:ASP126 4.6 22.6 1.0
O A:HOH1251 4.6 9.3 1.0
O A:HOH1154 4.7 25.8 1.0
O A:HOH1130 4.7 11.9 1.0
O A:HOH1143 4.8 18.0 1.0
N15 A:ZOL397 4.8 15.2 1.0
O13 A:ZOL397 4.8 11.5 1.0
CA A:ASP126 4.9 22.6 1.0
MG A:MG1104 5.0 12.4 1.0

Magnesium binding site 2 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 2 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1103

b:18.8
occ:1.00
OD1 A:ASP126 2.0 19.9 1.0
O A:HOH1162 2.1 25.7 1.0
O A:HOH1143 2.1 18.0 1.0
O12 A:ZOL397 2.2 17.6 1.0
OD2 A:ASP130 2.2 25.6 1.0
O A:HOH1130 2.3 11.9 1.0
O A:HOH1161 2.3 22.1 1.0
CG A:ASP130 3.0 25.5 1.0
MG A:MG1102 3.0 9.1 1.0
OD1 A:ASP130 3.0 25.4 1.0
CG A:ASP126 3.1 22.1 1.0
P9 A:ZOL397 3.4 18.3 1.0
O10 A:ZOL397 3.5 19.7 1.0
OD2 A:ASP126 3.6 18.9 1.0
OD2 A:ASP198 3.8 24.0 1.0
O A:HOH1164 4.0 4.9 1.0
NE2 A:GLN195 4.1 22.1 1.0
OE1 A:GLN195 4.2 22.6 1.0
CB A:ASP126 4.3 22.7 1.0
CB A:ASP130 4.4 25.3 1.0
CG A:ASP198 4.4 21.2 1.0
C7 A:ZOL397 4.5 15.6 1.0
O A:ASP126 4.5 22.1 1.0
C19 A:ZOL397 4.5 12.4 1.0
C8 A:ZOL397 4.6 16.8 1.0
O11 A:ZOL397 4.6 16.8 1.0
OD1 A:ASP198 4.6 23.2 1.0
CD A:GLN195 4.6 24.7 1.0
O A:HOH1117 4.6 23.7 1.0
N15 A:ZOL397 4.7 15.2 1.0
CA A:ASP126 4.7 22.6 1.0
O17 A:ZOL397 4.8 20.5 1.0
NZ A:LYS243 4.8 18.6 1.0
O A:HOH1142 4.8 10.9 1.0
NZ A:LYS310 4.9 24.6 1.0
CE A:MET129 4.9 27.7 1.0
C A:ASP126 5.0 22.6 1.0
CE A:LYS310 5.0 23.7 1.0

Magnesium binding site 3 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 3 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1104

b:12.4
occ:1.00
O16 A:ZOL397 1.9 19.7 1.0
O11 A:ZOL397 2.0 16.8 1.0
O A:HOH1144 2.0 8.2 1.0
O A:HOH1116 2.1 11.1 1.0
O A:HOH1251 2.4 9.3 1.0
OD1 A:ASP287 2.4 21.3 1.0
CG A:ASP287 3.3 21.2 1.0
P14 A:ZOL397 3.4 18.1 1.0
P9 A:ZOL397 3.4 18.3 1.0
OD2 A:ASP287 3.6 24.6 1.0
O13 A:ZOL397 3.6 11.5 1.0
O A:HOH1117 3.7 23.7 1.0
C8 A:ZOL397 3.7 16.8 1.0
O A:HOH1246 3.9 25.7 1.0
O A:HOH1164 4.0 4.9 1.0
O17 A:ZOL397 4.1 20.5 1.0
OD2 A:ASP305 4.1 22.2 1.0
O12 A:ZOL397 4.2 17.6 1.0
OD1 A:ASP305 4.2 23.7 1.0
O A:ASP287 4.3 22.3 1.0
O15 A:ZOL397 4.4 16.0 1.0
O10 A:ZOL397 4.5 19.7 1.0
NE2 A:GLN284 4.5 20.8 1.0
CB A:ASP287 4.5 21.2 1.0
OD2 A:ASP288 4.5 23.1 1.0
C A:ASP287 4.6 22.1 1.0
CG A:ASP305 4.6 22.6 1.0
NZ A:LYS301 4.6 16.6 1.0
OD2 A:ASP291 4.6 26.0 1.0
CB A:ASP291 4.7 23.7 1.0
N A:ASP288 5.0 21.9 1.0
MG A:MG1102 5.0 9.1 1.0

Magnesium binding site 4 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 4 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1102

b:12.9
occ:1.00
O B:HOH1144 1.9 3.5 1.0
OD2 B:ASP130 2.1 23.7 1.0
O B:HOH1145 2.2 6.3 1.0
OD2 B:ASP126 2.2 26.1 1.0
O B:HOH1186 2.2 16.1 1.0
O12 B:ZOL397 2.3 14.5 1.0
CG B:ASP130 2.9 22.2 1.0
OD1 B:ASP130 3.0 21.4 1.0
O10 B:ZOL397 3.2 17.5 1.0
CG B:ASP126 3.2 24.9 1.0
MG B:MG1104 3.3 6.8 1.0
P9 B:ZOL397 3.3 13.5 1.0
OD1 B:ASP126 3.6 23.5 1.0
OD2 B:ASP198 3.9 30.0 1.0
O B:HOH1187 3.9 5.6 1.0
OD1 B:ASP198 3.9 26.5 1.0
CG B:ASP198 4.2 26.0 1.0
OE1 B:GLN195 4.3 19.6 1.0
O11 B:ZOL397 4.3 11.9 1.0
CB B:ASP130 4.3 20.9 1.0
NZ B:LYS310 4.4 16.8 1.0
NE2 B:GLN195 4.4 14.1 1.0
O B:HOH1261 4.4 17.9 1.0
CB B:ASP126 4.5 25.2 1.0
C8 B:ZOL397 4.6 14.4 1.0
CE B:LYS310 4.7 13.5 1.0
O17 B:ZOL397 4.7 15.5 1.0
C19 B:ZOL397 4.8 12.4 1.0
O B:ASP126 4.8 25.6 1.0
C7 B:ZOL397 4.8 14.9 1.0
CD B:GLN195 4.8 18.6 1.0
NZ B:LYS243 4.8 23.7 1.0
N15 B:ZOL397 4.9 14.4 1.0

Magnesium binding site 5 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 5 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1103

b:10.5
occ:1.00
O16 B:ZOL397 1.9 12.0 1.0
O B:HOH1149 2.0 12.9 1.0
O B:HOH1164 2.0 17.0 1.0
O11 B:ZOL397 2.1 11.9 1.0
OD1 B:ASP287 2.2 16.1 1.0
O B:HOH1135 2.3 23.7 1.0
CG B:ASP287 3.1 20.3 1.0
P14 B:ZOL397 3.4 14.9 1.0
P9 B:ZOL397 3.4 13.5 1.0
OD2 B:ASP287 3.5 22.3 1.0
O13 B:ZOL397 3.6 19.4 1.0
O B:HOH1261 3.7 17.9 1.0
C8 B:ZOL397 3.7 14.4 1.0
C1 B:EDO1106 3.7 25.7 1.0
O B:ASP287 4.1 20.7 1.0
OD2 B:ASP305 4.1 23.7 1.0
O12 B:ZOL397 4.2 14.5 1.0
O17 B:ZOL397 4.3 15.5 1.0
C B:ASP287 4.3 20.7 1.0
O2 B:EDO1106 4.3 25.7 1.0
NE2 B:GLN284 4.3 16.9 1.0
OD1 B:ASP305 4.3 25.0 1.0
OD2 B:ASP291 4.4 28.5 1.0
CB B:ASP287 4.4 19.8 1.0
O B:HOH1187 4.4 5.6 1.0
O15 B:ZOL397 4.5 14.2 1.0
CB B:ASP291 4.5 25.3 1.0
O10 B:ZOL397 4.6 17.5 1.0
C2 B:EDO1106 4.6 26.1 1.0
OD2 B:ASP288 4.7 21.9 1.0
O1 B:EDO1106 4.7 25.2 1.0
N B:ASP288 4.7 21.3 1.0
CG B:ASP305 4.7 22.8 1.0
NZ B:LYS301 4.7 19.2 1.0
CG B:ASP291 4.8 27.0 1.0
CE B:LYS301 4.9 17.3 1.0
CA B:ASP287 4.9 20.5 1.0

Magnesium binding site 6 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 6 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1104

b:6.8
occ:1.00
O B:HOH1187 2.0 5.6 1.0
O17 B:ZOL397 2.0 15.5 1.0
O12 B:ZOL397 2.1 14.5 1.0
OD1 B:ASP126 2.1 23.5 1.0
OD2 B:ASP130 2.2 23.7 1.0
O B:HOH1162 2.4 2.9 1.0
CG B:ASP126 3.0 24.9 1.0
P14 B:ZOL397 3.2 14.9 1.0
CG B:ASP130 3.2 22.2 1.0
MG B:MG1102 3.3 12.9 1.0
OD2 B:ASP126 3.3 26.1 1.0
P9 B:ZOL397 3.5 13.5 1.0
CB B:ASP130 3.6 20.9 1.0
C8 B:ZOL397 3.8 14.4 1.0
NH2 B:ARG135 3.9 17.1 1.0
O1 B:EDO1106 3.9 25.2 1.0
O16 B:ZOL397 4.0 12.0 1.0
O B:HOH1138 4.0 17.3 1.0
C7 B:ZOL397 4.2 14.9 1.0
O11 B:ZOL397 4.2 11.9 1.0
OD1 B:ASP127 4.3 22.6 1.0
O B:ASP126 4.3 25.6 1.0
OD1 B:ASP130 4.3 21.4 1.0
CB B:ASP126 4.4 25.2 1.0
O15 B:ZOL397 4.4 14.2 1.0
O B:HOH1186 4.5 16.1 1.0
O B:HOH1164 4.5 17.0 1.0
C1 B:EDO1106 4.5 25.7 1.0
O10 B:ZOL397 4.6 17.5 1.0
C B:ASP126 4.6 25.1 1.0
O B:HOH1219 4.7 9.6 1.0
O B:HOH1144 4.8 3.5 1.0
O B:HOH1188 4.9 16.7 1.0

Magnesium binding site 7 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 7 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1102

b:10.8
occ:1.00
O C:HOH1192 2.0 8.2 1.0
O17 C:ZOL397 2.0 17.3 1.0
O12 C:ZOL397 2.1 18.0 1.0
OD1 C:ASP126 2.2 22.0 1.0
O C:HOH1118 2.2 17.4 1.0
OD2 C:ASP130 2.3 26.5 1.0
CG C:ASP126 3.1 23.6 1.0
P14 C:ZOL397 3.2 12.9 1.0
MG C:MG1103 3.3 17.0 1.0
CG C:ASP130 3.3 25.6 1.0
P9 C:ZOL397 3.5 13.9 1.0
OD2 C:ASP126 3.5 22.1 1.0
CB C:ASP130 3.6 23.9 1.0
C8 C:ZOL397 3.8 14.7 1.0
O16 C:ZOL397 3.8 12.1 1.0
O C:HOH1212 3.9 18.3 1.0
O11 C:ZOL397 4.0 12.7 1.0
C7 C:ZOL397 4.1 14.4 1.0
O C:HOH1110 4.2 11.0 1.0
NH1 C:ARG135 4.3 20.4 1.0
O C:HOH1120 4.4 2.0 0.5
OD1 C:ASP127 4.4 21.5 1.0
O15 C:ZOL397 4.4 11.5 1.0
CB C:ASP126 4.5 23.8 1.0
O C:ASP126 4.5 25.0 1.0
OD1 C:ASP130 4.5 25.4 1.0
O C:HOH1238 4.5 18.5 1.0
O10 C:ZOL397 4.6 19.5 1.0
O C:HOH1142 4.6 21.4 1.0
C C:ASP126 4.7 24.4 1.0
O C:HOH1175 4.9 6.0 1.0
MG C:MG1104 5.0 16.2 1.0

Magnesium binding site 8 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 8 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1103

b:17.0
occ:1.00
OD2 C:ASP130 2.0 26.5 1.0
O C:HOH1175 2.1 6.0 1.0
OD2 C:ASP126 2.1 22.1 1.0
O C:HOH1120 2.2 2.0 0.5
O12 C:ZOL397 2.2 18.0 1.0
O C:HOH1122 2.2 12.2 1.0
CG C:ASP130 3.0 25.6 1.0
CG C:ASP126 3.1 23.6 1.0
O10 C:ZOL397 3.2 19.5 1.0
OD1 C:ASP130 3.2 25.4 1.0
P9 C:ZOL397 3.3 13.9 1.0
MG C:MG1102 3.3 10.8 1.0
OD1 C:ASP126 3.5 22.0 1.0
OD2 C:ASP198 3.9 27.3 1.0
O C:HOH1192 4.1 8.2 1.0
OE1 C:GLN195 4.2 20.4 1.0
NE2 C:GLN195 4.2 18.5 1.0
OD1 C:ASP198 4.2 24.8 1.0
CG C:ASP198 4.3 25.2 1.0
O11 C:ZOL397 4.3 12.7 1.0
CB C:ASP130 4.3 23.9 1.0
O C:HOH1176 4.4 17.9 1.0
CB C:ASP126 4.4 23.8 1.0
C7 C:ZOL397 4.5 14.4 1.0
C19 C:ZOL397 4.5 10.6 1.0
C8 C:ZOL397 4.5 14.7 1.0
NZ C:LYS310 4.6 21.9 1.0
N15 C:ZOL397 4.6 13.1 1.0
CD C:GLN195 4.6 20.0 1.0
O17 C:ZOL397 4.7 17.3 1.0
NZ C:LYS243 4.8 17.9 1.0
O C:ASP126 4.8 25.0 1.0
CE C:LYS310 4.8 20.0 1.0
CA C:ASP126 5.0 24.1 1.0

Magnesium binding site 9 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 9 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1104

b:16.2
occ:1.00
O C:HOH1167 1.8 31.8 1.0
O16 C:ZOL397 1.9 12.1 1.0
O C:HOH1191 2.1 17.6 1.0
O11 C:ZOL397 2.2 12.7 1.0
OD1 C:ASP287 2.3 24.7 1.0
O C:HOH1110 2.4 11.0 1.0
CG C:ASP287 3.2 24.8 1.0
P14 C:ZOL397 3.4 12.9 1.0
OD2 C:ASP287 3.5 25.9 1.0
P9 C:ZOL397 3.5 13.9 1.0
O13 C:ZOL397 3.8 11.8 1.0
C8 C:ZOL397 3.8 14.7 1.0
O C:HOH1176 3.9 17.9 1.0
OD2 C:ASP305 4.0 22.2 1.0
OD2 C:ASP291 4.1 25.5 1.0
O C:ASP287 4.1 20.1 1.0
O C:HOH1192 4.2 8.2 1.0
O12 C:ZOL397 4.3 18.0 1.0
O17 C:ZOL397 4.3 17.3 1.0
C C:ASP287 4.3 21.9 1.0
OD1 C:ASP305 4.3 23.0 1.0
CB C:ASP287 4.4 21.4 1.0
O15 C:ZOL397 4.5 11.5 1.0
NE2 C:GLN284 4.5 21.4 1.0
CB C:ASP291 4.6 24.1 1.0
CG C:ASP305 4.6 20.4 1.0
NZ C:LYS301 4.6 11.6 1.0
N C:ASP288 4.6 22.5 1.0
OD2 C:ASP288 4.7 25.1 1.0
O10 C:ZOL397 4.7 19.5 1.0
CG C:ASP291 4.7 23.4 1.0
CE C:LYS301 4.9 14.3 1.0
CA C:ASP287 4.9 21.6 1.0
CA C:ASP288 4.9 22.6 1.0
MG C:MG1102 5.0 10.8 1.0

Magnesium binding site 10 out of 12 in 3ez3

Go back to Magnesium Binding Sites List in 3ez3
Magnesium binding site 10 out of 12 in the Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1102

b:9.8
occ:1.00
O D:HOH1200 2.0 4.0 1.0
OD2 D:ASP130 2.1 25.6 1.0
O11 D:ZOL397 2.1 9.9 1.0
O D:HOH1157 2.1 15.3 1.0
OD2 D:ASP126 2.1 19.8 1.0
O D:HOH1160 2.2 19.1 1.0
CG D:ASP130 2.9 23.4 1.0
MG D:MG1103 3.0 12.0 1.0
OD1 D:ASP130 3.0 24.0 1.0
CG D:ASP126 3.1 22.9 1.0
O12 D:ZOL397 3.4 14.2 1.0
P9 D:ZOL397 3.4 13.1 1.0
OD1 D:ASP126 3.5 19.6 1.0
O D:HOH1158 3.8 17.9 1.0
OD2 D:ASP198 3.9 25.5 1.0
OD1 D:ASP198 4.2 24.6 1.0
NE2 D:GLN195 4.2 20.7 1.0
NZ D:LYS310 4.3 12.1 1.0
CB D:ASP130 4.3 22.9 1.0
OE1 D:GLN195 4.3 18.3 1.0
CG D:ASP198 4.3 22.8 1.0
O D:HOH1159 4.3 19.0 1.0
O10 D:ZOL397 4.4 10.5 1.0
CB D:ASP126 4.4 22.5 1.0
O D:ASP126 4.6 20.3 1.0
O16 D:ZOL397 4.6 15.4 1.0
C8 D:ZOL397 4.6 13.4 1.0
C7 D:ZOL397 4.6 12.4 1.0
CD D:GLN195 4.7 21.4 1.0
NZ D:LYS243 4.7 20.9 1.0
C19 D:ZOL397 4.8 10.6 1.0
N15 D:ZOL397 4.8 13.2 1.0
CE D:LYS310 4.9 15.3 1.0
CA D:ASP126 5.0 22.7 1.0

Reference:

A.K.Wernimont, J.Lew, Y.Zhao, I.Kozieradzki, D.Cossar, M.Schapira, A.Bochkarev, C.H.Arrowsmith, C.Bountra, J.Weigelt, A.M.Edwards, R.Hui, J.D.Artz. Crystal Structure of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase PVX_092040 with Zoledronate and Ipp Bound To Be Published.
Page generated: Wed Aug 14 13:24:06 2024

Last articles

Ca in 2WVX
Ca in 2WUV
Ca in 2WUW
Ca in 2WTF
Ca in 2WR9
Ca in 2WRA
Ca in 2WQZ
Ca in 2WQS
Ca in 2WQ8
Ca in 2WQD
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy