Magnesium in PDB 3ez6: Structure of Para-Adp Complex:Tetragonal Form

The structure of Structure of Para-Adp Complex:Tetragonal Form, PDB code: 3ez6 was solved by M.A.Schumacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	101.33 / 2.58
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	143.300, 143.300, 108.000, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 24

The binding sites of Magnesium atom in the Structure of Para-Adp Complex:Tetragonal Form (pdb code 3ez6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Para-Adp Complex:Tetragonal Form, PDB code: 3ez6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Para-Adp Complex:Tetragonal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Para-Adp Complex:Tetragonal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg399 b:46.3 occ:1.00 OG1 A:THR123 2.5 35.5 1.0 O A:HOH600 2.7 35.6 1.0 O2B A:ADP501 3.0 50.0 1.0 O A:HOH577 3.2 28.2 1.0 OD1 A:ASP251 3.5 28.2 1.0 OD2 A:ASP152 3.6 28.0 1.0 O A:SER252 3.6 27.4 1.0 OD2 A:ASP251 3.8 19.4 1.0 CB A:THR123 3.8 24.6 1.0 PB A:ADP501 3.9 44.0 1.0 N A:THR123 4.0 22.5 1.0 O3B A:ADP501 4.0 48.4 1.0 CG A:ASP251 4.0 27.2 1.0 CB A:LYS122 4.2 29.5 1.0 O A:HOH566 4.2 22.8 1.0 NZ A:LYS122 4.3 45.1 1.0 CA A:THR123 4.3 21.9 1.0 CE A:LYS122 4.4 49.2 1.0 C A:SER252 4.6 27.2 1.0 O A:HOH417 4.6 18.9 1.0 CA A:GLY253 4.7 24.9 1.0 CG A:ASP152 4.7 27.7 1.0 C A:LYS122 4.8 28.6 1.0 O A:HOH631 4.9 32.2 1.0 CG2 A:THR123 4.9 17.5 1.0 O3A A:ADP501 5.0 41.3 1.0 OG A:SER156 5.0 36.7 1.0

Magnesium binding site 2 out of 2 in the Structure of Para-Adp Complex:Tetragonal Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Para-Adp Complex:Tetragonal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg399 b:41.4 occ:1.00 O B:HOH582 2.4 35.2 1.0 OG1 B:THR123 2.6 21.0 1.0 O2B B:ADP502 2.9 47.0 1.0 O B:HOH402 3.1 20.1 1.0 NZ B:LYS122 3.4 42.2 1.0 O3B B:ADP502 3.5 53.4 1.0 PB B:ADP502 3.6 37.4 1.0 OD2 B:ASP152 3.6 22.4 1.0 CB B:THR123 3.7 20.6 1.0 OD1 B:ASP251 3.9 37.8 1.0 O B:SER252 4.0 39.5 1.0 OD2 B:ASP251 4.0 35.6 1.0 O B:HOH615 4.1 26.7 1.0 N B:THR123 4.1 17.1 1.0 O B:HOH651 4.4 29.8 1.0 CG B:ASP251 4.4 34.4 1.0 CA B:THR123 4.4 22.5 1.0 CB B:LYS122 4.5 21.3 1.0 O B:HOH400 4.5 8.1 1.0 CE B:LYS122 4.6 41.6 1.0 O3A B:ADP502 4.7 41.3 1.0 CG B:ASP152 4.7 21.3 1.0 C B:SER252 4.9 36.9 1.0 O1B B:ADP502 4.9 51.0 1.0 CG2 B:THR123 4.9 15.3 1.0 C B:LYS122 4.9 21.3 1.0 CA B:GLY253 5.0 36.0 1.0

T.D.Dunham, W.Xu, B.E.Funnell, M.A.Schumacher. Structural Basis For Adp-Mediated Transcriptional Regulation By P1 and P7 Para. Embo J. V. 28 1792 2009.
ISSN: ISSN 0261-4189
PubMed: 19461582
DOI: 10.1038/EMBOJ.2009.120