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Magnesium in PDB 3f5u: Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+

Enzymatic activity of Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+

All present enzymatic activity of Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+, PDB code: 3f5u was solved by L.K.Mcnamara, D.M.Watterson, J.S.Brunzelle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.669, 62.461, 88.599, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 24.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+ (pdb code 3f5u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+, PDB code: 3f5u:

Magnesium binding site 1 out of 1 in 3f5u

Go back to Magnesium Binding Sites List in 3f5u
Magnesium binding site 1 out of 1 in the Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Death Associated Protein Kinase in Complex with Amppnp and MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg297

b:51.3
occ:1.00
 O1A A:ANP296 2.1 32.3 1.0
OD2 A:ASP161 2.1 28.4 1.0
O3G A:ANP296 2.1 43.6 0.6
O A:HOH397 2.2 41.1 1.0
O2G A:ANP296 2.5 43.1 0.6
PG A:ANP296 2.5 46.7 0.6
N3B A:ANP296 2.8 41.7 1.0
CG A:ASP161 2.9 24.3 1.0
PA A:ANP296 3.2 28.5 1.0
OD1 A:ASN144 3.2 28.3 1.0
CB A:ASP161 3.6 21.6 1.0
O3A A:ANP296 3.6 34.2 1.0
OD1 A:ASP161 3.7 25.7 1.0
PB A:ANP296 3.8 39.2 1.0
ND2 A:ASN144 3.9 26.0 1.0
CG A:ASN144 3.9 27.3 1.0
O1G A:ANP296 4.0 44.6 1.0
OE2 A:GLU143 4.0 41.2 1.0
O2A A:ANP296 4.1 28.4 1.0
O5' A:ANP296 4.3 28.6 1.0
C5' A:ANP296 4.3 28.4 1.0
O3' A:ANP296 4.3 31.6 1.0
OD2 A:ASP139 4.6 28.5 1.0
O1B A:ANP296 4.6 40.1 1.0
C3' A:ANP296 4.7 30.0 1.0
CD A:GLU143 4.8 35.5 1.0
CA A:ASP161 4.9 21.1 1.0
O2B A:ANP296 5.0 42.5 1.0

Reference:

L.K.Mcnamara, D.M.Watterson, J.S.Brunzelle. Structural Insight Into Nucleotide Recognition By Human Death-Associated Protein Kinase. Acta Crystallogr.,Sect.D V. 65 241 2009.
ISSN: ISSN 0907-4449
PubMed: 19237746
DOI: 10.1107/S0907444908043679
Page generated: Wed Aug 14 13:33:30 2024

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