Magnesium in PDB 3fbg: Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus

The structure of Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus, PDB code: 3fbg was solved by J.B.Bonanno, M.Gilmore, K.T.Bain, J.Do, R.Romero, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.198, 93.552, 83.240, 90.00, 98.86, 90.00
R / Rfree (%)	23.5 / 27.5

The binding sites of Magnesium atom in the Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus (pdb code 3fbg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus, PDB code: 3fbg:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg345 b:38.5 occ:1.00 O A:HOH521 2.1 42.4 1.0 O A:HOH363 2.1 38.9 1.0 O A:HOH821 2.3 53.0 1.0 O A:HOH553 2.3 35.1 1.0 NE2 A:HIS284 2.3 20.5 1.0 O A:HOH422 2.3 32.5 1.0 CE1 A:HIS284 3.2 18.3 1.0 CD2 A:HIS284 3.2 19.2 1.0 O A:HOH474 3.8 65.2 1.0 OE2 A:GLU288 3.9 32.8 1.0 O A:HOH543 4.2 43.7 1.0 OE1 A:GLU288 4.3 34.8 1.0 O A:HOH752 4.3 50.2 1.0 O A:HOH771 4.3 56.8 1.0 ND1 A:HIS284 4.3 20.2 1.0 CG A:HIS284 4.4 16.8 1.0 CD A:GLU288 4.4 27.8 1.0 CE A:MET78 4.7 20.2 1.0 O A:HOH514 4.8 33.2 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg346 b:16.9 occ:1.00 O B:HOH415 1.9 19.2 1.0 O A:HOH470 2.1 21.9 1.0 O B:HOH392 2.1 20.2 1.0 O A:HOH414 2.1 18.6 1.0 O B:HOH387 2.1 19.3 1.0 O B:HOH393 2.2 17.1 1.0 O A:HOH390 4.1 18.6 1.0 O B:HOH383 4.1 22.6 1.0 O A:HOH604 4.3 16.2 1.0 O A:HOH405 4.3 27.1 1.0 O B:HOH413 4.3 22.8 1.0 O B:HOH378 4.3 21.7 1.0 O A:HOH413 4.4 23.4 1.0 O B:HOH357 4.4 18.5 1.0 O B:VAL137 4.4 18.2 1.0 O A:HOH419 4.4 34.6 1.0 O A:VAL137 4.5 13.4 1.0 O B:HOH407 4.6 38.2 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg345 b:32.7 occ:1.00 O B:HOH813 2.0 38.1 1.0 O B:HOH812 2.1 36.3 1.0 O B:HOH814 2.1 35.9 1.0 O B:HOH517 2.1 31.4 1.0 O B:HOH394 2.1 36.3 1.0 NE2 B:HIS284 2.6 26.0 1.0 CD2 B:HIS284 3.5 23.1 1.0 CE1 B:HIS284 3.6 23.8 1.0 O B:HOH739 4.0 44.6 1.0 O B:HOH376 4.1 38.7 1.0 O B:HOH552 4.2 49.0 1.0 OE1 B:GLU288 4.2 32.6 1.0 OE2 B:GLU288 4.2 32.1 1.0 CD B:GLU288 4.5 31.7 1.0 ND1 B:HIS284 4.7 23.8 1.0 CG B:HIS284 4.7 22.8 1.0 CE B:MET78 4.9 28.4 1.0

J.B.Bonanno, M.Gilmore, K.T.Bain, J.Do, R.Romero, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of A Putative Arginate Lyase From Staphylococcus Haemolyticus To Be Published.