Magnesium in PDB 3fbs: The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens

The structure of The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens, PDB code: 3fbs was solved by R.Zhang, X.Xu, H.Zheng, A.Savchenko, A.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	80.32 / 2.15
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	95.190, 95.190, 149.237, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 23.6

The binding sites of Magnesium atom in the The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens (pdb code 3fbs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens, PDB code: 3fbs:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:21.6 occ:1.00 ND1 A:HIS130 3.0 28.0 1.0 N A:HIS130 3.2 13.8 1.0 N A:CYS131 3.3 15.0 1.0 C6 A:FAD298 3.5 45.6 1.0 CB A:PHE129 3.6 13.1 1.0 C7 A:FAD298 3.6 43.0 1.0 CE1 A:HIS130 3.7 24.9 1.0 CB A:CYS131 3.7 16.4 1.0 ND1 A:HIS135 3.7 17.4 1.0 C5X A:FAD298 3.9 45.6 1.0 CG A:HIS130 3.9 21.7 1.0 CA A:PHE129 4.0 12.4 1.0 CA A:HIS130 4.0 16.1 1.0 C8 A:FAD298 4.0 47.6 1.0 C7M A:FAD298 4.0 41.9 1.0 C A:PHE129 4.1 13.0 1.0 CA A:CYS131 4.1 14.4 1.0 C A:HIS130 4.1 16.4 1.0 CB A:CYS134 4.1 15.7 1.0 CD1 A:PHE129 4.2 15.6 1.0 O A:CYS131 4.2 11.4 1.0 CB A:HIS130 4.3 17.7 1.0 C9A A:FAD298 4.3 39.9 1.0 C9 A:FAD298 4.4 48.3 1.0 CG A:PHE129 4.4 13.8 1.0 N5 A:FAD298 4.5 49.0 1.0 CE1 A:HIS135 4.5 13.0 1.0 C A:CYS131 4.6 12.9 1.0 SG A:CYS134 4.6 16.6 1.0 CG A:HIS135 4.7 12.7 1.0 NE2 A:HIS130 4.8 26.1 1.0 C8M A:FAD298 4.8 55.2 1.0 CB A:HIS135 4.8 13.9 1.0 CD2 A:HIS130 4.9 24.5 1.0 SG A:CYS131 4.9 25.5 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:34.2 occ:1.00 ND1 B:HIS130 2.7 32.6 1.0 N B:HIS130 3.1 22.4 1.0 CE1 B:HIS130 3.3 34.2 1.0 N B:CYS131 3.3 24.4 1.0 CB B:CYS131 3.7 24.5 1.0 ND1 B:HIS135 3.7 20.8 1.0 CB B:PHE129 3.7 19.6 1.0 CG B:HIS130 3.8 29.7 1.0 C6 B:FAD298 3.8 61.9 1.0 C7 B:FAD298 3.9 62.2 1.0 CA B:PHE129 4.0 19.2 1.0 CA B:HIS130 4.0 24.6 1.0 C B:PHE129 4.0 20.4 1.0 CA B:CYS131 4.1 23.5 1.0 C B:HIS130 4.1 24.4 1.0 C5X B:FAD298 4.2 60.4 1.0 O B:CYS131 4.2 18.8 1.0 C7M B:FAD298 4.3 60.9 1.0 CB B:HIS130 4.3 25.8 1.0 CD1 B:PHE129 4.3 24.8 1.0 CB B:CYS134 4.3 19.7 1.0 C8 B:FAD298 4.3 64.8 1.0 NE2 B:HIS130 4.4 34.4 1.0 CE1 B:HIS135 4.4 19.4 1.0 CG B:PHE129 4.5 19.5 1.0 C9A B:FAD298 4.6 59.0 1.0 C B:CYS131 4.6 21.4 1.0 CD2 B:HIS130 4.6 33.4 1.0 C9 B:FAD298 4.7 64.4 1.0 N5 B:FAD298 4.7 60.5 1.0 CG B:HIS135 4.8 18.6 1.0 SG B:CYS134 4.8 24.3 1.0

R.Zhang, X.Xu, H.Zheng, A.Savchenko, A.Edwards, A.Joachimiak. The Crystal Structure of the Oxidoreductase From Agrobacterium Tumefaciens To Be Published 2008.