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Magnesium in PDB 3feu: Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri

Protein crystallography data

The structure of Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri, PDB code: 3feu was solved by Y.Kim, A.Sather, G.Shackelford, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.59 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.807, 55.737, 62.521, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 24.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri (pdb code 3feu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri, PDB code: 3feu:

Magnesium binding site 1 out of 1 in 3feu

Go back to Magnesium Binding Sites List in 3feu
Magnesium binding site 1 out of 1 in the Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg183

b:35.5
occ:1.00
O A:VAL77 2.3 28.4 1.0
O A:GLU74 2.3 20.8 1.0
O A:GLY79 2.4 33.4 1.0
OE2 A:GLU74 2.5 38.6 1.0
O A:HOH292 2.9 42.8 1.0
O A:HOH341 3.2 48.3 1.0
CD A:GLU74 3.3 30.6 1.0
C A:GLU74 3.4 20.4 1.0
C A:VAL77 3.4 28.1 1.0
C A:GLY79 3.5 32.5 1.0
N A:GLY79 3.5 32.5 1.0
CG A:GLU74 3.7 23.0 1.0
CA A:GLY79 3.9 32.5 1.0
C A:ASP78 3.9 31.7 0.5
C A:ASP78 4.0 31.8 0.5
OE1 A:GLU74 4.1 32.7 1.0
CA A:ASP78 4.1 30.9 0.5
O A:HOH282 4.2 39.8 1.0
CA A:ASP78 4.2 30.9 0.5
CG2 A:VAL77 4.3 23.6 1.0
CA A:GLU74 4.3 18.6 1.0
N A:ASP78 4.3 29.8 0.5
N A:ASP78 4.3 29.8 0.5
N A:MSE75 4.3 19.0 1.0
N A:VAL77 4.4 24.3 1.0
CA A:MSE75 4.4 19.2 1.0
CA A:VAL77 4.4 26.0 1.0
CB A:GLU74 4.6 19.8 1.0
N A:ALA80 4.6 31.8 1.0
C A:MSE75 4.6 19.0 1.0
O A:ASP78 4.7 32.3 0.5
O A:ASP78 4.7 32.4 0.5
O A:HOH322 4.9 55.9 1.0
CB A:VAL77 5.0 26.4 1.0
O A:MSE75 5.0 20.6 1.0

Reference:

Y.Kim, A.Sather, G.Shackelford, A.Joachimiak. Crystal Structure of Dsba-Like Thioredoxin Domain VF_A0457 From Vibrio Fischeri To Be Published.
Page generated: Wed Aug 14 13:46:08 2024

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