Atomistry » Magnesium » PDB 3fcw-3fpk » 3fha
Atomistry »
  Magnesium »
    PDB 3fcw-3fpk »
      3fha »

Magnesium in PDB 3fha: Structure of Endo-Beta-N-Acetylglucosaminidase A

Enzymatic activity of Structure of Endo-Beta-N-Acetylglucosaminidase A

All present enzymatic activity of Structure of Endo-Beta-N-Acetylglucosaminidase A:
3.2.1.96;

Protein crystallography data

The structure of Structure of Endo-Beta-N-Acetylglucosaminidase A, PDB code: 3fha was solved by J.Yin, L.Li, N.Shaw, Y.Li, J.K.Song, W.Zhang, C.Xia, R.Zhang, A.Joachimiak, H.C.Zhang, L.X.Wang, P.Wang, Z.J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 79.892, 78.972, 117.267, 84.23, 80.77, 64.01
R / Rfree (%) 20.3 / 25.1

Other elements in 3fha:

The structure of Structure of Endo-Beta-N-Acetylglucosaminidase A also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Endo-Beta-N-Acetylglucosaminidase A (pdb code 3fha). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Endo-Beta-N-Acetylglucosaminidase A, PDB code: 3fha:

Magnesium binding site 1 out of 1 in 3fha

Go back to Magnesium Binding Sites List in 3fha
Magnesium binding site 1 out of 1 in the Structure of Endo-Beta-N-Acetylglucosaminidase A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Endo-Beta-N-Acetylglucosaminidase A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg706

b:44.0
occ:1.00
O B:HOH1823 2.3 28.3 1.0
O B:HOH657 3.5 20.8 1.0
O B:GLY5 4.3 15.8 1.0
CB B:PRO542 4.3 14.7 1.0
O B:ASN4 4.3 20.8 1.0
OH B:TYR540 4.5 14.0 1.0
C B:ASN4 4.7 21.6 1.0
O B:HOH2214 4.8 41.7 1.0
CD1 B:LEU7 5.0 16.3 1.0

Reference:

J.Yin, L.Li, N.Shaw, Y.Li, J.K.Song, W.Zhang, C.Xia, R.Zhang, A.Joachimiak, H.C.Zhang, L.X.Wang, Z.J.Liu, P.Wang. Structural Basis and Catalytic Mechanism For the Dual Functional Endo-Beta-N-Acetylglucosaminidase A. Plos One V. 4 E4658 2009.
ISSN: ESSN 1932-6203
PubMed: 19252736
DOI: 10.1371/JOURNAL.PONE.0004658
Page generated: Wed Aug 14 13:47:09 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy