Magnesium in PDB 3fhd: Crystal Structure of the Shutoff and Exonuclease Protein From Kaposis Sarcoma Associated Herpesvirus

The structure of Crystal Structure of the Shutoff and Exonuclease Protein From Kaposis Sarcoma Associated Herpesvirus, PDB code: 3fhd was solved by S.L.Dahlroth, D.Gurmu, F.Schmitzberger, J.Haas, H.Erlandsen, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.63 / 1.85
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	43.247, 48.905, 67.294, 95.48, 106.86, 104.27
R / Rfree (%)	18.4 / 22.8

The binding sites of Magnesium atom in the Crystal Structure of the Shutoff and Exonuclease Protein From Kaposis Sarcoma Associated Herpesvirus (pdb code 3fhd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Shutoff and Exonuclease Protein From Kaposis Sarcoma Associated Herpesvirus, PDB code: 3fhd:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Shutoff and Exonuclease Protein From Kaposis Sarcoma Associated Herpesvirus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Shutoff and Exonuclease Protein From Kaposis Sarcoma Associated Herpesvirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg490 b:21.6 occ:1.00 O A:ILE245 2.4 17.4 1.0 OE2 A:GLU244 2.4 26.7 1.0 OD2 A:ASP221 2.4 21.1 1.0 O A:HOH687 2.8 43.7 1.0 OE1 A:GLU184 3.1 42.8 1.0 OE2 A:GLU184 3.1 41.8 1.0 CG A:ASP221 3.3 22.0 1.0 CD A:GLU184 3.4 40.5 1.0 CD A:GLU244 3.4 24.7 1.0 OD1 A:ASP221 3.5 24.1 1.0 C A:ILE245 3.5 18.9 1.0 N A:ILE245 3.8 16.6 1.0 OE1 A:GLU244 3.9 24.3 1.0 NZ A:LYS246 3.9 23.8 1.0 CA A:ILE245 4.1 18.8 1.0 CB A:ILE245 4.4 19.9 1.0 CE A:LYS246 4.4 25.2 1.0 CD A:LYS246 4.4 24.7 1.0 CG A:GLU244 4.5 20.0 1.0 N A:LYS246 4.6 20.1 1.0 CB A:ASP221 4.6 18.1 1.0 CG A:GLU184 4.7 33.2 1.0 O A:HOH668 4.7 46.8 1.0 C A:GLU244 4.7 17.9 1.0 O A:HOH529 4.9 35.5 1.0 CA A:LYS246 5.0 21.4 1.0

S.L.Dahlroth, D.Gurmu, F.Schmitzberger, H.Engman, J.Haas, H.Erlandsen, P.Nordlund. Crystal Structure of the Shutoff and Exonuclease Protein From the Oncogenic Kaposi'S Sarcoma-Associated Herpesvirus Febs J. V. 276 6636 2009.
ISSN: ISSN 1742-464X
PubMed: 19843164
DOI: 10.1111/J.1742-4658.2009.07374.X