Atomistry » Magnesium » PDB 3fcw-3fpk » 3fpb
Atomistry »
  Magnesium »
    PDB 3fcw-3fpk »
      3fpb »

Magnesium in PDB 3fpb: The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp

Enzymatic activity of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp

All present enzymatic activity of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp:
3.6.3.8;

Protein crystallography data

The structure of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp, PDB code: 3fpb was solved by K.Moncoq, J.P.Morth, M.Bublitz, M.Laursen, P.Nissen, H.S.Young, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.94 / 2.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 175.360, 69.870, 143.500, 90.00, 107.16, 90.00
R / Rfree (%) 18.3 / 23.1

Other elements in 3fpb:

The structure of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp (pdb code 3fpb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp, PDB code: 3fpb:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3fpb

Go back to Magnesium Binding Sites List in 3fpb
Magnesium binding site 1 out of 3 in the The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg995

b:37.5
occ:1.00
F4 A:MF4996 2.0 34.6 1.0
OD1 A:ASP703 2.0 56.0 1.0
O A:HOH1053 2.2 41.8 1.0
O A:THR353 2.2 44.8 1.0
OD2 A:ASP351 2.3 54.3 1.0
O A:HOH1063 2.3 34.1 1.0
CG A:ASP703 2.9 51.2 1.0
CG A:ASP351 3.0 43.9 1.0
OD2 A:ASP703 3.1 57.9 1.0
OD1 A:ASP351 3.2 34.8 1.0
C A:THR353 3.4 41.7 1.0
MG A:MF4996 3.6 47.5 1.0
OD2 A:ASP707 3.9 44.7 1.0
OG1 A:THR355 4.1 49.1 1.0
CA A:THR353 4.1 35.1 1.0
N A:GLY704 4.2 46.9 1.0
N A:THR353 4.2 40.5 1.0
CB A:ASP703 4.3 38.5 1.0
CB A:THR353 4.3 32.4 1.0
CB A:ASP351 4.4 41.2 1.0
N A:ASP703 4.4 45.9 1.0
N A:GLY354 4.4 36.2 1.0
CA A:GLY182 4.5 33.1 1.0
O A:GLY182 4.5 30.9 1.0
F3 A:MF4996 4.6 38.2 1.0
CA A:GLY354 4.6 36.6 1.0
CA A:ASP703 4.7 43.0 1.0
C A:ASP703 4.7 40.9 1.0
CA A:GLY704 4.7 42.4 1.0
N A:THR355 4.8 49.5 1.0
C A:LYS352 4.8 48.1 1.0
F1 A:MF4996 4.8 43.8 1.0
CG2 A:THR353 4.9 28.2 1.0
C A:GLY354 4.9 48.1 1.0
CG A:ASP707 5.0 47.2 1.0
F2 A:MF4996 5.0 58.2 1.0
C A:GLY182 5.0 39.5 1.0

Magnesium binding site 2 out of 3 in 3fpb

Go back to Magnesium Binding Sites List in 3fpb
Magnesium binding site 2 out of 3 in the The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg996

b:47.5
occ:1.00
MG A:MF4996 0.0 47.5 1.0
F1 A:MF4996 1.9 43.8 1.0
F3 A:MF4996 2.0 38.2 1.0
F4 A:MF4996 2.0 34.6 1.0
F2 A:MF4996 2.0 58.2 1.0
OD1 A:ASP351 2.1 34.8 1.0
CG A:ASP351 3.3 43.9 1.0
OG1 A:THR625 3.4 39.5 1.0
MG A:MG995 3.6 37.5 1.0
O A:HOH1053 3.7 41.8 1.0
N A:GLY626 3.8 35.6 1.0
O A:THR181 3.8 40.7 1.0
OD2 A:ASP351 3.8 54.3 1.0
N A:THR353 3.9 40.5 1.0
CB A:THR353 4.0 32.4 1.0
NZ A:LYS684 4.1 36.5 1.0
CA A:GLY182 4.1 33.1 1.0
CA A:THR625 4.1 40.3 1.0
ND2 A:ASN706 4.1 29.1 1.0
N A:LYS352 4.2 34.4 1.0
OE1 A:GLU183 4.2 59.6 1.0
CB A:THR625 4.3 40.0 1.0
OG1 A:THR353 4.3 29.2 1.0
O A:THR353 4.4 44.8 1.0
CA A:THR353 4.5 35.1 1.0
C A:THR625 4.5 41.4 1.0
O A:ILE624 4.5 42.0 1.0
CB A:ASP351 4.6 41.2 1.0
O A:HOH1063 4.6 34.1 1.0
CA A:GLY626 4.6 35.4 1.0
C A:GLY182 4.7 39.5 1.0
C A:THR181 4.7 36.4 1.0
C A:LYS352 4.7 48.1 1.0
CA A:LYS352 4.8 38.0 1.0
O A:GLY182 4.8 30.9 1.0
N A:GLY182 4.9 37.6 1.0
CA A:ASP351 4.9 41.8 1.0
N A:ASP627 5.0 38.8 1.0
C A:THR353 5.0 41.7 1.0

Magnesium binding site 3 out of 3 in 3fpb

Go back to Magnesium Binding Sites List in 3fpb
Magnesium binding site 3 out of 3 in the The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of Sarcoplasmic Reticulum CA2+-Atpase Bound to Cyclopiazonic Acid with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1000

b:0.2
occ:1.00
OE1 A:GLN56 1.9 0.7 1.0
O A:HOH1192 2.0 76.9 1.0
O A:HOH1066 2.2 92.8 1.0
O1 A:CZA1001 2.4 99.6 1.0
O2 A:CZA1001 2.4 0.1 1.0
O A:HOH1065 2.6 81.8 1.0
CD A:GLN56 3.1 0.4 1.0
C6 A:CZA1001 3.1 0.4 1.0
C2 A:CZA1001 3.3 0.2 1.0
C3 A:CZA1001 3.5 0.6 1.0
NE2 A:GLN56 3.9 0.3 1.0
CG A:GLN56 4.2 0.5 1.0
CB A:GLN56 4.2 0.1 1.0
O A:GLN56 4.3 0.9 1.0
CA A:ALA102 4.4 0.2 1.0
O A:ASN101 4.4 0.2 1.0
CA A:GLY105 4.5 0.8 1.0
C5 A:CZA1001 4.6 0.7 1.0
CA A:GLN56 4.6 0.7 1.0
C1 A:CZA1001 4.7 83.8 1.0
C4 A:CZA1001 4.8 0.6 1.0
C A:ASN101 4.9 0.5 1.0
C A:GLN56 4.9 0.6 1.0
N A:ALA102 4.9 0.7 1.0
CB A:ALA102 5.0 0.5 1.0
O A:ALA102 5.0 0.2 1.0

Reference:

M.Laursen, M.Bublitz, K.Moncoq, C.Olesen, J.V.Moller, H.S.Young, P.Nissen, J.P.Morth. Cyclopiazonic Acid Is Complexed to A Divalent Metal Ion When Bound to the Sarcoplasmic Reticulum CA2+-Atpase. J.Biol.Chem. V. 284 13513 2009.
ISSN: ISSN 0021-9258
PubMed: 19289472
DOI: 10.1074/JBC.C900031200
Page generated: Mon Dec 14 08:08:57 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy