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Magnesium in PDB 3fpk: Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium

Enzymatic activity of Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium

All present enzymatic activity of Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium:
1.18.1.2;

Protein crystallography data

The structure of Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium, PDB code: 3fpk was solved by Y.Kim, M.Gu, J.Stam, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.15 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.423, 69.989, 109.630, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.3

Other elements in 3fpk:

The structure of Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium (pdb code 3fpk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium, PDB code: 3fpk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3fpk

Go back to Magnesium Binding Sites List in 3fpk
Magnesium binding site 1 out of 2 in the Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg249

b:38.1
occ:1.00
O A:HOH554 2.1 47.1 1.0
O A:ALA197 2.3 19.9 1.0
O B:HOH692 2.5 39.4 1.0
O A:HOH493 2.8 53.5 1.0
C A:ALA197 3.3 19.6 1.0
CA A:ALA197 3.8 19.5 1.0
O B:HOH542 3.9 53.4 1.0
OE2 B:GLU157 4.0 27.2 0.5
OE1 B:GLU157 4.1 21.9 0.5
CD B:GLU157 4.4 24.6 0.5
O A:HOH638 4.4 36.9 1.0
CB A:ALA197 4.4 19.9 1.0
N A:VAL198 4.5 19.5 1.0
O A:HOH648 4.6 34.9 1.0
O A:LYS196 4.6 21.7 1.0
OE1 A:GLN169 4.7 24.5 1.0
OE2 B:GLU157 4.7 27.4 0.5
CA A:VAL198 5.0 19.2 1.0
N A:ALA197 5.0 19.6 1.0

Magnesium binding site 2 out of 2 in 3fpk

Go back to Magnesium Binding Sites List in 3fpk
Magnesium binding site 2 out of 2 in the Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg249

b:25.2
occ:1.00
O B:HOH257 2.1 33.0 1.0
O A:HOH250 2.2 27.9 1.0
O B:ALA197 2.3 23.8 1.0
O B:HOH255 2.3 29.2 1.0
O A:HOH251 2.5 30.9 1.0
O B:HOH258 2.7 32.8 1.0
O A:HOH690 3.1 33.6 1.0
C B:ALA197 3.4 22.2 1.0
CA B:ALA197 4.1 21.7 1.0
O A:HOH487 4.3 24.7 1.0
NE2 A:GLN160 4.4 31.5 1.0
O B:HOH372 4.4 24.7 1.0
N B:VAL198 4.5 21.3 1.0
OE1 B:GLN169 4.6 22.0 1.0
CA B:VAL198 4.7 20.3 1.0
O A:HOH584 4.8 28.4 1.0
C B:VAL198 4.8 21.2 1.0
O B:LYS196 4.8 21.7 1.0
O B:VAL198 4.8 20.6 1.0
CB B:ALA197 4.9 21.6 1.0

Reference:

Y.Kim, M.Gu, J.Stam, W.F.Anderson, A.Joachimiak. Crystal Structure of Ferredoxin-Nadp Reductase From Salmonella Typhimurium To Be Published.
Page generated: Mon Dec 14 08:09:01 2020

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