Magnesium in PDB 3fvd: Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium

The structure of Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium, PDB code: 3fvd was solved by V.N.Malashkevich, M.Rutter, K.T.Bain, C.Lau, S.Ozyurt, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.99 / 2.30
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	126.518, 126.518, 97.294, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 22.5

The binding sites of Magnesium atom in the Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium (pdb code 3fvd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium, PDB code: 3fvd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:17.0 occ:0.50 O A:HOH675 2.3 55.7 1.0 OE2 B:GLU218 2.4 47.0 1.0 OE2 B:GLU242 2.5 25.1 1.0 O A:HOH384 2.5 40.5 1.0 OD2 B:ASP241 2.7 24.8 1.0 OE1 B:GLU242 2.7 23.6 1.0 CD B:GLU242 3.0 18.3 1.0 OD1 B:ASP194 3.1 32.0 1.0 CD B:GLU218 3.2 26.4 1.0 CG B:ASP241 3.5 27.1 1.0 O A:HOH661 3.5 37.6 1.0 CB B:ASP241 3.6 21.1 1.0 CG B:GLU218 3.6 45.9 1.0 CG B:ASP194 3.8 58.2 1.0 OD2 B:ASP194 3.8 32.0 1.0 ND2 B:ASN196 4.0 32.6 1.0 OE1 B:GLU218 4.2 47.3 1.0 CB B:GLN219 4.4 18.4 1.0 OH B:TYR57 4.4 16.4 1.0 CG B:ASN196 4.4 68.3 1.0 CG B:GLU242 4.5 23.1 1.0 NZ B:LYS263 4.5 21.8 1.0 OD1 B:ASP241 4.6 23.5 1.0 OD1 B:ASN196 4.7 31.0 1.0 CB B:GLU218 4.8 20.1 1.0 CA B:ASN196 4.8 28.3 1.0 CD B:LYS263 4.9 20.4 1.0 N B:GLU242 4.9 16.1 1.0 NZ B:LYS265 5.0 17.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:17.3 occ:0.50 O A:HOH408 1.9 32.3 1.0 OE2 A:GLU218 2.1 51.7 1.0 OD2 A:ASP241 2.3 18.6 1.0 O A:HOH579 2.7 23.9 1.0 OE2 A:GLU242 2.9 30.2 1.0 CD A:GLU218 3.1 23.6 1.0 OD1 A:ASP194 3.2 24.1 1.0 CG A:ASP241 3.3 21.6 1.0 OE1 A:GLU242 3.4 30.0 1.0 CD A:GLU242 3.4 19.2 1.0 CB A:ASP241 3.6 14.7 1.0 CG A:GLU218 3.8 51.0 1.0 CG A:ASP194 3.9 62.9 1.0 OD2 A:ASP194 4.0 26.1 1.0 OE1 A:GLU218 4.1 52.3 1.0 OH A:TYR57 4.1 16.3 1.0 NZ A:LYS263 4.4 20.9 1.0 OD1 A:ASP241 4.5 17.3 1.0 NZ A:LYS265 4.6 17.8 1.0 CD A:LYS263 4.8 17.1 1.0 CG A:GLU242 4.8 29.6 1.0 CE A:LYS263 4.8 21.9 1.0 ND2 A:ASN196 4.9 32.5 1.0 CB A:GLU218 4.9 18.6 1.0 CB A:GLN219 5.0 13.3 1.0

V.N.Malashkevich, M.Rutter, K.T.Bain, C.Lau, S.Ozyurt, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of A Member of Enolase Superfamily From Roseovarius Nubinhibens Ism Complexed with Magnesium To Be Published.