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Magnesium in PDB 3fw9: Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine

Enzymatic activity of Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine

All present enzymatic activity of Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine:
1.21.3.3;

Protein crystallography data

The structure of Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine, PDB code: 3fw9 was solved by A.Winkler, P.Macheroux, K.Gruber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.90 / 1.49
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.720, 68.720, 247.170, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine (pdb code 3fw9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine, PDB code: 3fw9:

Magnesium binding site 1 out of 1 in 3fw9

Go back to Magnesium Binding Sites List in 3fw9
Magnesium binding site 1 out of 1 in the Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Berberine Bridge Enzyme in Complex with (S)-Scoulerine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg524

b:46.9
occ:1.00
O A:HOH576 2.0 39.5 1.0
O A:HOH5 2.0 34.3 1.0
OD1 A:ASP47 2.1 59.6 1.0
O A:HOH578 2.2 44.9 1.0
O A:HOH4 2.2 47.4 1.0
OD1 A:ASP45 2.4 43.0 1.0
CG A:ASP47 3.1 64.5 1.0
CG A:ASP45 3.2 33.8 1.0
OD2 A:ASP45 3.3 31.8 1.0
OD2 A:ASP47 3.5 72.6 1.0
O A:HOH927 4.2 47.3 1.0
N A:ASP47 4.3 46.0 1.0
CB A:ASP47 4.5 56.8 1.0
OG A:SER46 4.6 88.9 1.0
CB A:ASP45 4.7 37.8 1.0
CA A:ASP47 4.7 49.6 1.0
C A:ASP47 4.8 40.5 1.0
N A:SER46 4.9 60.4 1.0

Reference:

A.Winkler, K.Motz, S.Riedl, M.Puhl, P.Macheroux, K.Gruber. Structural Roles of Biocovalent Flaninylation in Berberine Bridge Enzyme To Be Published.
Page generated: Mon Dec 14 08:09:24 2020

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