Magnesium in PDB 3g1k: MTH0212 (Wt) Crystallized in A Monoclinic Space Group

All present enzymatic activity of MTH0212 (Wt) Crystallized in A Monoclinic Space Group:
3.1.11.2;

The structure of MTH0212 (Wt) Crystallized in A Monoclinic Space Group, PDB code: 3g1k was solved by K.Lakomek, A.Dickmanns, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.28 / 3.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.635, 80.345, 81.839, 90.00, 90.32, 90.00
R / Rfree (%)	20.3 / 26.6

The binding sites of Magnesium atom in the MTH0212 (Wt) Crystallized in A Monoclinic Space Group (pdb code 3g1k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the MTH0212 (Wt) Crystallized in A Monoclinic Space Group, PDB code: 3g1k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the MTH0212 (Wt) Crystallized in A Monoclinic Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of MTH0212 (Wt) Crystallized in A Monoclinic Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg266 b:2.0 occ:1.00 OE2 A:GLU38 2.1 26.6 1.0 OD1 A:ASN12 2.3 21.7 1.0 CD A:GLU38 3.2 25.6 1.0 CG A:ASN12 3.2 21.2 1.0 OD1 A:ASN10 3.4 19.0 1.0 OD2 A:ASP247 3.4 16.5 1.0 OD1 A:ASP247 3.5 17.9 1.0 OE1 A:GLU38 3.6 26.4 1.0 CB A:ASN12 3.6 21.2 1.0 CG A:ASP247 3.9 16.4 1.0 NE2 A:HIS248 3.9 17.4 1.0 CD2 A:HIS248 4.0 16.5 1.0 CG A:ASN10 4.1 19.2 1.0 ND2 A:ASN10 4.1 18.3 1.0 CA A:ASN12 4.2 21.3 1.0 ND2 A:ASN12 4.4 20.3 1.0 CG A:GLU38 4.5 23.7 1.0 N A:ASN12 4.8 20.6 1.0 CB A:GLU38 4.9 22.6 1.0

Magnesium binding site 2 out of 2 in the MTH0212 (Wt) Crystallized in A Monoclinic Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of MTH0212 (Wt) Crystallized in A Monoclinic Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg266 b:12.5 occ:1.00 OE2 B:GLU38 2.1 26.5 1.0 OD1 B:ASN12 2.2 21.7 1.0 CD B:GLU38 3.1 25.6 1.0 CG B:ASN12 3.2 21.2 1.0 OE1 B:GLU38 3.3 26.4 1.0 OD2 B:ASP247 3.5 16.3 1.0 OD1 B:ASP247 3.8 17.8 1.0 OD1 B:ASN10 3.9 19.2 1.0 CB B:ASN12 3.9 21.1 1.0 CG B:ASP247 4.1 16.3 1.0 ND2 B:ASN12 4.3 20.4 1.0 NE2 B:HIS248 4.4 17.5 1.0 CA B:ASN12 4.4 21.3 1.0 CG B:GLU38 4.5 23.7 1.0 CD2 B:HIS248 4.5 16.6 1.0 CG B:ASN10 4.6 19.2 1.0 ND2 B:ASN10 4.6 18.3 1.0 OH B:TYR111 5.0 15.2 1.0

K.Lakomek, A.Dickmanns, E.Ciirdaeva, L.Schomacher, R.Ficner. Crystal Structure Analysis of Dna Uridine Endonuclease MTH212 Bound to Dna J.Mol.Biol. V. 399 604 2010.
ISSN: ISSN 0022-2836
PubMed: 20434457
DOI: 10.1016/J.JMB.2010.04.044