Magnesium in PDB 3g37: Cryo-Em Structure of Actin Filament in the Presence of Phosphate

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 72;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate (pdb code 3g37). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 72 binding sites of Magnesium where determined in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate, PDB code: 3g37:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg900 b:0.0 occ:1.00 O1B O:ADP800 2.3 0.0 1.0 PB O:ADP800 3.6 0.0 1.0 O3B O:ADP800 3.6 0.0 1.0 NE2 O:GLN137 4.0 0.0 1.0 OD1 O:ASP11 4.0 0.0 1.0 O1A O:ADP800 4.1 0.0 1.0 OD2 O:ASP11 4.2 0.0 1.0 O O:ASN12 4.4 0.0 1.0 CG O:ASP11 4.5 0.0 1.0 CB O:VAL339 4.5 0.0 1.0 O3A O:ADP800 4.5 0.0 1.0 CG2 O:VAL339 4.6 0.0 1.0 CG1 O:VAL339 4.6 0.0 1.0 CD O:GLN137 4.6 0.0 1.0 OD1 O:ASP154 4.7 0.0 1.0 PA O:ADP800 4.7 0.0 1.0 O2B O:ADP800 4.8 0.0 1.0 OE1 O:GLN137 4.9 0.0 1.0 NZ O:LYS18 4.9 0.0 1.0

Magnesium binding site 2 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg901 b:0.0 occ:1.00 OD2 O:ASP288 1.8 0.0 1.0 OD2 O:ASP286 1.9 0.0 1.0 CG O:ASP288 2.9 0.0 1.0 CG O:ASP286 3.0 0.0 1.0 OD1 O:ASP286 3.4 0.0 1.0 CB O:ASP288 3.6 0.0 1.0 CG2 O:ILE287 3.6 0.0 1.0 OD1 O:ASP288 3.8 0.0 1.0 N O:ASP288 3.8 0.0 1.0 CB O:ASP286 4.3 0.0 1.0 CA O:ASP288 4.3 0.0 1.0 N O:ILE287 4.4 0.0 1.0 C O:ILE287 4.6 0.0 1.0 CA O:ILE287 4.8 0.0 1.0 CB O:ILE287 4.8 0.0 1.0 C O:ASP286 4.9 0.0 1.0

Magnesium binding site 3 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg902 b:0.0 occ:1.00 OE1 O:GLN263 1.8 0.0 1.0 OG O:SER265 2.8 0.0 1.0 CD O:GLN263 3.0 0.0 1.0 O O:MET269 3.6 0.0 1.0 NE2 O:GLN263 3.7 0.0 1.0 O O:SER271 3.7 0.0 1.0 CB O:SER265 4.0 0.0 1.0 CG O:GLN263 4.2 0.0 1.0 O O:ALA272 4.3 0.0 1.0 O O:GLU270 4.6 0.0 1.0 N O:SER265 4.8 0.0 1.0 C O:MET269 4.8 0.0 1.0 C O:SER271 4.9 0.0 1.0 CA O:SER265 4.9 0.0 1.0 C O:GLU270 4.9 0.0 1.0

Magnesium binding site 4 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg903 b:0.0 occ:1.00 O3 O:PO4801 3.4 0.0 1.0 NH1 P:ARG183 4.0 0.0 1.0 O1 O:PO4801 4.0 0.0 1.0 P O:PO4801 4.3 0.0 1.0 O4 O:PO4801 4.6 0.0 1.0 OE2 O:GLU205 4.6 0.0 1.0 OE1 O:GLU205 4.8 0.0 1.0

Magnesium binding site 5 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg904 b:0.0 occ:1.00 OE1 O:GLN354 1.9 0.0 1.0 O O:GLN354 2.0 0.0 1.0 CD O:GLN354 3.1 0.0 1.0 C O:GLN354 3.1 0.0 1.0 NE2 O:GLN354 3.9 0.0 1.0 CA O:GLN354 3.9 0.0 1.0 CG O:GLN354 4.1 0.0 1.0 O O:TRP356 4.2 0.0 1.0 N O:MET355 4.2 0.0 1.0 CB O:GLN354 4.4 0.0 1.0 CA O:MET355 4.4 0.0 1.0 C O:MET355 4.7 0.0 1.0 O O:GLN353 4.9 0.0 1.0 N O:TRP356 4.9 0.0 1.0 CE O:LYS373 4.9 0.0 1.0

Magnesium binding site 6 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg905 b:0.0 occ:1.00 OD1 O:ASP222 3.9 0.0 1.0 OD2 O:ASP222 4.0 0.0 1.0 OE2 O:GLU316 4.2 0.0 1.0 NH2 O:ARG312 4.3 0.0 1.0 CG O:ASP222 4.3 0.0 1.0 OE1 O:GLU316 4.4 0.0 1.0 CD O:GLU316 4.7 0.0 1.0 OE1 O:GLU259 4.9 0.0 1.0

Magnesium binding site 7 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg900 b:0.0 occ:1.00 O1B P:ADP800 2.3 0.0 1.0 PB P:ADP800 3.6 0.0 1.0 O3B P:ADP800 3.6 0.0 1.0 OD1 P:ASP11 4.0 0.0 1.0 O1A P:ADP800 4.1 0.0 1.0 NE2 P:GLN137 4.2 0.0 1.0 OD2 P:ASP11 4.2 0.0 1.0 O3A P:ADP800 4.4 0.0 1.0 OE1 P:GLN137 4.4 0.0 1.0 CG P:ASP11 4.5 0.0 1.0 OD1 P:ASP154 4.5 0.0 1.0 CA P:GLY13 4.5 0.0 1.0 CD P:GLN137 4.6 0.0 1.0 O P:ASN12 4.7 0.0 1.0 PA P:ADP800 4.7 0.0 1.0 NZ P:LYS18 4.8 0.0 1.0 O2B P:ADP800 4.8 0.0 1.0

Magnesium binding site 8 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg901 b:0.0 occ:1.00 OD2 P:ASP288 1.8 0.0 1.0 OD2 P:ASP286 2.0 0.0 1.0 CG P:ASP286 3.0 0.0 1.0 CG P:ASP288 3.0 0.0 1.0 OD1 P:ASP286 3.2 0.0 1.0 CG2 P:ILE287 3.8 0.0 1.0 CB P:ASP288 3.9 0.0 1.0 OD1 P:ASP288 3.9 0.0 1.0 N P:ASP288 4.1 0.0 1.0 CB P:ASP286 4.4 0.0 1.0 CA P:ASP288 4.6 0.0 1.0 N P:ILE287 4.7 0.0 1.0

Magnesium binding site 9 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg902 b:0.0 occ:1.00 OE1 P:GLN263 2.5 0.0 1.0 OG P:SER265 2.9 0.0 1.0 CD P:GLN263 3.5 0.0 1.0 O P:SER271 3.7 0.0 1.0 O P:MET269 3.9 0.0 1.0 NE2 P:GLN263 3.9 0.0 1.0 CB P:SER265 4.2 0.0 1.0 O P:PRO264 4.5 0.0 1.0 O P:ALA272 4.5 0.0 1.0 NH1 O:ARG39 4.6 0.0 1.0 O P:GLU270 4.6 0.0 1.0 OG1 O:THR66 4.6 0.0 1.0 C P:SER271 4.8 0.0 1.0 C P:MET269 4.8 0.0 1.0 CG P:GLN263 4.9 0.0 1.0 C P:GLU270 4.9 0.0 1.0 C P:PRO264 4.9 0.0 1.0

Magnesium binding site 10 out of 72 in the Cryo-Em Structure of Actin Filament in the Presence of Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Actin Filament in the Presence of Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg904 b:0.0 occ:1.00 OE1 P:GLN354 1.9 0.0 1.0 O P:GLN354 2.1 0.0 1.0 CD P:GLN354 3.1 0.0 1.0 C P:GLN354 3.2 0.0 1.0 CA P:GLN354 3.8 0.0 1.0 NE2 P:GLN354 3.9 0.0 1.0 O P:TRP356 4.0 0.0 1.0 CG P:GLN354 4.2 0.0 1.0 N P:MET355 4.3 0.0 1.0 CB P:GLN354 4.4 0.0 1.0 CA P:MET355 4.6 0.0 1.0 C P:MET355 4.6 0.0 1.0 N P:TRP356 4.9 0.0 1.0 O P:MET355 4.9 0.0 1.0 O P:GLN353 5.0 0.0 1.0

K.Murakami, T.Yasunaga, T.Q.Noguchi, Y.Gomibuchi, K.X.Ngo, T.Q.Uyeda, T.Wakabayashi. Structural Basis For Actin Assembly, Activation of Atp Hydrolysis, and Delayed Phosphate Release Cell(Cambridge,Mass.) V. 143 275 2010.
ISSN: ISSN 0092-8674
PubMed: 20946985
DOI: 10.1016/J.CELL.2010.09.034