Magnesium in PDB 3g3y: MTH0212 in Complex with Ssdna in Space Group P32

All present enzymatic activity of MTH0212 in Complex with Ssdna in Space Group P32:
3.1.11.2;

The structure of MTH0212 in Complex with Ssdna in Space Group P32, PDB code: 3g3y was solved by K.Lakomek, A.Dickmanns, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.93 / 2.50
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	80.487, 80.487, 79.749, 90.00, 90.00, 120.00
R / Rfree (%)	24.5 / 29.8

The binding sites of Magnesium atom in the MTH0212 in Complex with Ssdna in Space Group P32 (pdb code 3g3y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the MTH0212 in Complex with Ssdna in Space Group P32, PDB code: 3g3y:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the MTH0212 in Complex with Ssdna in Space Group P32


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of MTH0212 in Complex with Ssdna in Space Group P32 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg266 b:44.3 occ:1.00 OD1 A:ASN12 2.2 41.2 1.0 O A:HOH291 2.3 37.7 1.0 OE2 A:GLU38 2.3 40.6 1.0 O A:HOH292 2.6 35.0 1.0 OE1 A:GLU38 2.8 41.6 1.0 CD A:GLU38 2.8 39.2 1.0 CG A:ASN12 3.2 40.6 1.0 CB A:ASN12 3.8 40.6 1.0 CA A:ASN12 4.0 40.8 1.0 OD1 A:ASN10 4.1 35.3 1.0 OD1 A:ASP247 4.1 43.4 1.0 ND2 A:ASN12 4.3 41.0 1.0 CG A:GLU38 4.3 37.7 1.0 OD2 A:ASP247 4.3 42.8 1.0 ND2 A:ASN10 4.4 36.0 1.0 O A:HOH270 4.5 26.3 1.0 CG A:ASN10 4.6 36.6 1.0 CG A:ASP247 4.6 42.4 1.0 CB A:GLU38 4.8 36.4 1.0 OH A:TYR111 4.8 38.5 1.0 N A:ASN12 4.9 40.0 1.0

Magnesium binding site 2 out of 2 in the MTH0212 in Complex with Ssdna in Space Group P32


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of MTH0212 in Complex with Ssdna in Space Group P32 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg266 b:55.1 occ:1.00 OE2 B:GLU38 2.2 41.2 1.0 OD1 B:ASN12 2.5 43.8 1.0 CD B:GLU38 3.0 40.3 1.0 OE1 B:GLU38 3.1 42.9 1.0 O B:HOH279 3.3 35.0 1.0 CG B:ASN12 3.4 44.0 1.0 OD1 B:ASN10 3.9 37.2 1.0 CB B:ASN12 3.9 43.5 1.0 OD2 B:ASP247 4.0 46.9 1.0 OD1 B:ASP247 4.1 47.1 1.0 ND2 B:ASN10 4.1 38.2 1.0 CA B:ASN12 4.1 43.8 1.0 CG B:ASN10 4.4 39.0 1.0 OH B:TYR111 4.4 39.0 1.0 CG B:GLU38 4.4 39.7 1.0 ND2 B:ASN12 4.4 44.3 1.0 CG B:ASP247 4.5 46.3 1.0 CD2 B:HIS248 4.6 45.2 1.0 NE2 B:HIS248 4.7 44.0 1.0 CB B:GLU38 4.9 38.5 1.0 N B:ASN12 4.9 43.2 1.0

K.Lakomek, A.Dickmanns, E.Ciirdaeva, L.Schomacher, R.Ficner. Crystal Structure Analysis of Dna Uridine Endonuclease MTH212 Bound to Dna J.Mol.Biol. V. 399 604 2010.
ISSN: ISSN 0022-2836
PubMed: 20434457
DOI: 10.1016/J.JMB.2010.04.044