Magnesium in PDB 3gj0: Crystal Structure of Human Rangdp

The structure of Crystal Structure of Human Rangdp, PDB code: 3gj0 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.22 / 1.48
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	81.544, 81.544, 130.567, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 20.3

The binding sites of Magnesium atom in the Crystal Structure of Human Rangdp (pdb code 3gj0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human Rangdp, PDB code: 3gj0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human Rangdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Rangdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:14.0 occ:1.00 O1B A:GDP302 2.1 13.2 1.0 O A:HOH228 2.1 15.5 1.0 O A:HOH218 2.1 16.3 1.0 O A:HOH233 2.2 14.9 1.0 OG1 A:THR24 2.2 13.7 1.0 O A:HOH220 2.2 16.9 1.0 CB A:THR24 3.2 13.6 1.0 PB A:GDP302 3.3 14.1 1.0 O2B A:GDP302 3.5 15.7 1.0 N A:THR24 3.9 12.1 1.0 O A:HOH348 4.0 37.2 1.0 CA A:THR24 4.1 11.4 1.0 OD2 A:ASP65 4.2 16.6 1.0 OD1 A:ASP65 4.2 17.0 1.0 O2A A:GDP302 4.2 16.9 1.0 OG1 A:THR66 4.3 17.8 1.0 CG2 A:THR24 4.3 14.1 1.0 O3B A:GDP302 4.3 14.0 1.0 O A:THR66 4.3 17.0 1.0 OE2 A:GLU70 4.3 16.9 1.0 O A:HOH336 4.3 44.8 1.0 O A:HOH343 4.3 39.5 1.0 O3A A:GDP302 4.4 13.9 1.0 O A:HOH448 4.4 44.9 1.0 CG A:ASP65 4.6 15.9 1.0 PA A:GDP302 4.6 14.9 1.0 O1A A:GDP302 4.8 14.6 1.0 CB A:LYS23 4.8 11.5 1.0 NZ A:LYS23 4.9 12.9 1.0 N A:GLY68 5.0 17.6 1.0 C A:LYS23 5.0 11.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human Rangdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Rangdp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:19.3 occ:1.00 O1B B:GDP217 2.0 19.8 1.0 O B:HOH221 2.1 20.5 1.0 O B:HOH223 2.2 22.4 1.0 OG1 B:THR24 2.2 19.0 1.0 O B:HOH222 2.2 23.6 1.0 O B:HOH219 2.2 22.2 1.0 CB B:THR24 3.2 16.1 1.0 PB B:GDP217 3.2 19.5 1.0 O2B B:GDP217 3.4 21.6 1.0 O B:THR66 3.9 20.7 1.0 N B:THR24 3.9 15.7 1.0 O B:HOH352 4.1 31.5 1.0 O2A B:GDP217 4.1 21.7 1.0 CA B:THR24 4.1 15.0 1.0 OD2 B:ASP65 4.2 19.9 1.0 OD1 B:ASP65 4.3 21.7 1.0 O3B B:GDP217 4.3 20.3 1.0 CG2 B:THR24 4.3 18.6 1.0 O3A B:GDP217 4.3 19.5 1.0 O B:HOH347 4.6 39.7 1.0 PA B:GDP217 4.6 20.8 1.0 OG1 B:THR66 4.6 29.8 1.0 CG B:ASP65 4.6 20.2 1.0 O1A B:GDP217 4.7 18.6 1.0 N B:GLY68 4.9 37.9 1.0 CB B:LYS23 4.9 16.7 1.0 O B:HOH251 4.9 28.2 1.0 C B:THR66 5.0 19.8 1.0 NZ B:LYS23 5.0 18.6 1.0

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011