Magnesium in PDB 3gj5: Crystal Structure of Human Rangdp-NUP153ZNF4 Complex

The structure of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex, PDB code: 3gj5 was solved by J.R.Partridge, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.66 / 1.79
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	70.443, 61.343, 74.025, 90.00, 112.55, 90.00
R / Rfree (%)	19.9 / 23.3

The structure of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex (pdb code 3gj5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex, PDB code: 3gj5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:31.4 occ:1.00 OG1 A:THR24 2.1 26.7 1.0 O1B A:GDP302 2.1 29.6 1.0 O A:HOH506 2.2 26.9 1.0 O A:HOH507 2.2 31.4 1.0 O A:HOH508 2.3 28.5 1.0 O A:HOH509 2.3 28.3 1.0 CB A:THR24 3.2 34.1 1.0 PB A:GDP302 3.3 33.4 1.0 O2B A:GDP302 3.4 31.2 1.0 N A:THR24 3.9 29.0 1.0 OD2 A:ASP65 4.1 34.7 1.0 CA A:THR24 4.1 30.6 1.0 O A:THR66 4.2 31.9 1.0 OD1 A:ASP65 4.2 31.6 1.0 OG1 A:THR66 4.2 33.9 1.0 CG2 A:THR24 4.2 31.9 1.0 O2A A:GDP302 4.3 30.5 1.0 O3B A:GDP302 4.3 29.8 1.0 OE2 A:GLU70 4.4 31.4 1.0 O3A A:GDP302 4.5 28.9 1.0 CG A:ASP65 4.6 30.4 1.0 PA A:GDP302 4.6 31.9 1.0 O1A A:GDP302 4.7 32.2 1.0 N A:GLY68 4.8 33.9 1.0 C A:THR66 4.9 33.3 1.0 NZ A:LYS23 4.9 33.7 1.0 CB A:LYS23 5.0 29.7 1.0 C A:LYS23 5.0 30.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human Rangdp-NUP153ZNF4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Rangdp-NUP153ZNF4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:30.8 occ:1.00 O1B C:GDP302 2.1 29.0 1.0 OG1 C:THR24 2.2 27.6 1.0 O C:HOH511 2.2 27.5 1.0 O C:HOH513 2.2 29.6 1.0 O C:HOH512 2.2 27.6 1.0 O C:HOH510 2.3 28.7 1.0 CB C:THR24 3.2 30.3 1.0 PB C:GDP302 3.3 32.4 1.0 O2B C:GDP302 3.4 33.3 1.0 N C:THR24 3.9 26.2 1.0 O C:HOH372 4.1 60.9 1.0 OG1 C:THR66 4.1 33.3 1.0 CA C:THR24 4.1 29.5 1.0 O C:THR66 4.1 33.2 1.0 OD2 C:ASP65 4.2 33.3 1.0 OD1 C:ASP65 4.2 31.2 1.0 O2A C:GDP302 4.2 30.6 1.0 CG2 C:THR24 4.3 30.2 1.0 O3B C:GDP302 4.3 29.0 1.0 OE2 C:GLU70 4.3 31.9 1.0 O3A C:GDP302 4.4 28.6 1.0 CG C:ASP65 4.6 28.5 1.0 PA C:GDP302 4.7 31.9 1.0 O1A C:GDP302 4.7 31.4 1.0 N C:GLY68 4.8 32.7 1.0 NZ C:LYS23 4.9 33.3 1.0 C C:THR66 4.9 29.7 1.0 CB C:LYS23 5.0 29.1 1.0

J.R.Partridge, T.U.Schwartz. Crystallographic and Biochemical Analysis of the Ran-Binding Zinc Finger Domain. J.Mol.Biol. V. 391 375 2009.
ISSN: ISSN 0022-2836
PubMed: 19505478
DOI: 10.1016/J.JMB.2009.06.011