Magnesium in PDB 3gl1: Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae

The structure of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae, PDB code: 3gl1 was solved by J.Osipiuk, H.Li, M.Bargassa, C.Sahi, E.A.Craig, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.70 / 1.92
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	76.543, 54.504, 90.623, 90.00, 104.36, 90.00
R / Rfree (%)	16.4 / 21.8

The structure of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Chlorine

(Cl)

7 atoms

The binding sites of Magnesium atom in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae (pdb code 3gl1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae, PDB code: 3gl1:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:20.4 occ:1.00 O A:HOH414 1.9 7.1 1.0 O A:HOH601 2.0 16.3 1.0 O A:HOH427 2.0 13.3 1.0 O A:HOH548 2.1 12.9 1.0 O A:HOH602 2.1 13.7 1.0 O A:HOH440 2.2 14.7 1.0 O A:HOH555 3.9 22.0 1.0 OD2 A:ASP202 3.9 19.4 1.0 OE1 A:GLU177 4.1 18.6 1.0 OD2 A:ASP13 4.1 15.8 1.0 OD1 A:ASP202 4.2 12.3 1.0 O A:HOH477 4.3 22.2 1.0 O A:HOH632 4.4 15.9 1.0 OD1 A:ASP13 4.4 14.2 1.0 CL A:CL710 4.4 36.1 1.0 CG A:ASP202 4.5 19.8 1.0 O A:HOH421 4.6 11.6 1.0 CG A:ASP13 4.7 15.2 1.0 CG2 A:VAL372 4.8 15.5 1.0 CG1 A:VAL340 4.8 15.4 1.0 CD A:GLU177 4.9 19.5 1.0 CL A:CL707 4.9 25.8 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg703 b:21.3 occ:1.00 OD1 A:ASP288 2.0 15.7 1.0 OE1 B:GLN350 2.0 14.9 1.0 O B:HOH430 2.1 14.6 1.0 O A:HOH425 2.1 6.5 1.0 O B:HOH474 2.2 8.7 1.0 O A:HOH404 2.2 14.0 1.0 CG A:ASP288 3.1 16.9 1.0 CD B:GLN350 3.1 12.9 1.0 NE2 B:GLN350 3.6 11.2 1.0 CB A:ASP288 3.6 15.2 1.0 NZ B:LYS364 3.8 18.6 1.0 OD2 A:ASP288 4.1 20.9 1.0 O B:HOH439 4.2 14.2 1.0 O B:HOH436 4.2 14.6 1.0 CA A:ASP288 4.3 14.9 1.0 CG B:GLN350 4.3 14.1 1.0 O B:ARG345 4.4 14.5 1.0 O A:HOH441 4.4 14.7 1.0 OD2 A:ASP295 4.4 14.9 1.0 O A:HOH424 4.4 24.9 1.0 O B:HOH677 4.6 38.3 1.0 CB B:GLN350 4.7 14.8 1.0 CG A:ASP295 4.9 16.4 1.0 O B:HOH575 4.9 24.6 1.0 O A:HOH547 4.9 24.0 1.0 CA B:PRO347 4.9 14.1 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Atpase Domain of SSB1 Chaperone, A Member of the HSP70 Family, From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:15.8 occ:1.00 O B:HOH655 1.9 14.6 1.0 O B:HOH520 1.9 18.5 1.0 O B:HOH395 2.0 8.9 1.0 O B:HOH540 2.0 14.0 1.0 O B:HOH434 2.1 9.1 1.0 O B:HOH426 2.1 9.4 1.0 O B:HOH604 3.8 20.9 1.0 OD1 B:ASP202 4.0 13.6 1.0 OE1 B:GLU177 4.0 16.8 1.0 OD2 B:ASP202 4.1 14.6 1.0 O B:HOH472 4.2 19.2 1.0 OD2 B:ASP13 4.2 17.7 1.0 O B:HOH478 4.2 17.5 1.0 OD1 B:ASP13 4.3 14.4 1.0 CG B:ASP202 4.4 15.2 1.0 CL B:CL704 4.5 20.6 1.0 CG B:ASP13 4.7 18.3 1.0 CL B:CL705 4.7 20.6 1.0 O B:HOH387 4.7 12.6 1.0 CD B:GLU177 4.8 14.4 1.0 CG2 B:VAL372 4.9 14.6 1.0

J.Osipiuk, H.Li, M.Bargassa, C.Sahi, E.A.Craig, A.Joachimiak. Crystal Structure of Atpase Domain of SSB1 Chaperone, Member of the HSP70 Family From Saccharomyces Cerevisiae. To Be Published.