Magnesium in PDB 3go2: Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium

The structure of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium, PDB code: 3go2 was solved by J.B.Bonanno, M.Dickey, K.T.Bain, S.Chang, S.Ozyurt, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	104.697, 104.697, 145.828, 90.00, 90.00, 90.00
R / Rfree (%)	15.2 / 18.5

The binding sites of Magnesium atom in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium (pdb code 3go2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium, PDB code: 3go2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg408 b:41.5 occ:1.00 O A:HOH431 1.8 29.2 1.0 OD2 A:ASP217 2.3 15.8 1.0 O A:HOH410 2.4 23.1 1.0 OE2 A:GLU267 2.6 20.6 1.0 OE1 A:GLU243 2.6 18.4 1.0 O A:HOH413 2.7 22.5 1.0 OE1 A:GLU267 2.9 20.9 1.0 CD A:GLU267 3.0 18.7 1.0 CG A:ASP217 3.3 15.9 1.0 CD A:GLU243 3.5 17.9 1.0 OD1 A:ASP217 3.6 15.0 1.0 O A:HOH448 3.6 29.3 1.0 NZ A:LYS161 3.6 15.6 1.0 O A:HOH495 3.7 18.0 1.0 O A:HOH487 3.7 19.5 1.0 OD1 A:ASN219 3.8 21.0 1.0 OE2 A:GLU243 4.0 17.4 1.0 NE2 A:HIS316 4.3 16.6 1.0 CG A:GLU243 4.5 14.2 1.0 CE A:LYS161 4.5 13.8 1.0 CG A:GLU267 4.5 14.2 1.0 CB A:ASP217 4.6 14.4 1.0 CG A:ASN219 4.6 16.5 1.0 OD2 A:ASP245 4.6 18.5 1.0 CD2 A:HIS316 4.7 14.8 1.0 O A:HOH674 4.7 20.8 1.0 O A:HOH433 4.8 31.9 1.0 ND2 A:ASN219 4.9 16.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg409 b:16.2 occ:1.00 O A:THR268 2.4 12.8 1.0 O A:HOH414 2.4 16.2 1.0 OH A:TYR247 2.5 13.2 1.0 O A:HOH415 2.5 15.8 1.0 OG1 A:THR268 3.3 13.6 1.0 C A:THR268 3.4 12.2 1.0 CZ A:TYR247 3.5 13.9 1.0 CB A:THR268 3.5 11.9 1.0 CE1 A:TYR247 3.6 15.9 1.0 CA A:THR268 4.0 12.6 1.0 CE2 A:PHE270 4.3 15.6 1.0 O A:HOH456 4.4 14.4 1.0 N A:LEU269 4.4 11.8 1.0 CZ3 A:TRP293 4.5 13.3 1.0 CA A:LEU269 4.7 12.0 1.0 CD2 A:PHE270 4.7 12.9 1.0 CD2 A:LEU269 4.7 13.0 1.0 CE2 A:TYR247 4.7 12.8 1.0 CG2 A:THR268 4.8 12.9 1.0 OE1 A:GLU274 4.9 13.0 1.0 CD1 A:TYR247 4.9 14.5 1.0

J.B.Bonanno, M.Dickey, K.T.Bain, S.Chang, S.Ozyurt, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium. To Be Published.