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Magnesium in PDB 3gsi: Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate

Enzymatic activity of Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate

All present enzymatic activity of Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate:
1.5.3.10;

Protein crystallography data

The structure of Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate, PDB code: 3gsi was solved by T.Tralau, P.Lafite, C.Levy, J.P.Combe, N.S.Scrutton, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.79 / 2.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.215, 224.548, 119.382, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 20.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate (pdb code 3gsi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate, PDB code: 3gsi:

Magnesium binding site 1 out of 1 in 3gsi

Go back to Magnesium Binding Sites List in 3gsi
Magnesium binding site 1 out of 1 in the Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D552A Dimethylglycine Oxidase Mutant of Arthrobacter Globiformis in Complex with Tetrahydrofolate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:19.5
occ:1.00
 O A:HOH1245 2.1 12.2 1.0
O A:VAL412 2.2 15.1 1.0
OD2 A:ASP257 2.2 15.4 1.0
O A:HOH1246 2.2 14.0 1.0
O A:HOH1244 2.2 14.7 1.0
O A:HOH1243 2.2 16.6 1.0
CG A:ASP257 3.0 15.6 1.0
C A:VAL412 3.2 17.7 1.0
OD1 A:ASP257 3.3 14.2 1.0
OD1 A:ASP416 3.8 19.9 1.0
CA A:VAL412 3.9 11.8 1.0
O A:HOH1663 4.1 27.5 1.0
O A:TYR272 4.2 11.0 1.0
O A:HOH1592 4.2 27.0 1.0
O A:PHE411 4.2 13.4 1.0
N A:GLU413 4.2 13.9 1.0
O A:HOH1373 4.3 21.7 1.0
CB A:ASP257 4.4 12.0 1.0
CA A:GLU413 4.4 16.0 1.0
O A:HOH857 4.5 31.4 1.0
CG1 A:VAL412 4.5 18.5 1.0
N A:ILE414 4.5 13.9 1.0
C A:GLU413 4.7 14.4 1.0
CG A:ASP416 4.7 19.8 1.0
CB A:VAL412 4.9 16.9 1.0
CG2 A:ILE414 4.9 11.9 1.0
O A:HOH1405 4.9 20.0 1.0
N A:VAL412 5.0 13.5 1.0
OD2 A:ASP416 5.0 21.4 1.0

Reference:

T.Tralau, P.Lafite, C.Levy, J.P.Combe, N.S.Scrutton, D.Leys. An Internal Reaction Chamber in Dimethylglycine Oxidase Provides Efficient Protection From Exposure to Toxic Formaldehyde. J.Biol.Chem. V. 284 17826 2009.
ISSN: ISSN 0021-9258
PubMed: 19369258
DOI: 10.1074/JBC.M109.006262
Page generated: Wed Aug 14 14:55:42 2024

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