Magnesium in PDB 3gyb: Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum

The structure of Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum, PDB code: 3gyb was solved by K.Palani, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.55 / 1.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	38.073, 61.882, 65.604, 115.83, 106.37, 90.50
R / Rfree (%)	21.5 / 23.1

The binding sites of Magnesium atom in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum (pdb code 3gyb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum, PDB code: 3gyb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:12.6 occ:1.00 OD1 A:ASP287 2.1 10.8 1.0 O A:ASP270 2.2 11.8 1.0 O A:HOH463 2.2 12.8 1.0 O A:HOH464 2.2 11.7 1.0 OG A:SER289 2.2 12.6 1.0 O A:HOH465 2.2 12.3 1.0 CG A:ASP287 3.1 11.7 1.0 CB A:SER289 3.2 12.9 1.0 C A:ASP270 3.3 11.8 1.0 OD2 A:ASP287 3.4 13.4 1.0 N A:SER289 3.9 13.0 1.0 CA A:ASP270 4.0 10.8 1.0 O A:ASN271 4.0 12.2 1.0 OD2 A:ASP80 4.0 13.7 1.0 OD1 A:ASP80 4.1 13.8 1.0 O A:HOH357 4.1 20.4 1.0 CA A:SER289 4.2 12.5 1.0 C A:ASN271 4.3 13.5 1.0 O A:TRP77 4.3 12.2 1.0 N A:ASP287 4.3 12.6 1.0 N A:ASN271 4.4 12.2 1.0 CB A:ASP287 4.4 11.8 1.0 CB A:ASN271 4.5 13.2 1.0 OD1 A:ASP286 4.5 15.6 1.0 CB A:ASP270 4.5 12.1 1.0 CG A:ASP80 4.5 14.0 1.0 CA A:ASN271 4.6 12.7 1.0 O A:HOH16 4.7 14.2 1.0 CA A:ASP287 4.8 11.9 1.0 N A:ASN288 4.8 12.2 1.0 C A:ASP287 4.8 12.6 1.0 N A:THR272 4.9 12.5 1.0 O A:HOH356 4.9 23.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2 b:12.5 occ:1.00 OD1 B:ASP287 2.1 10.4 1.0 O B:ASP270 2.1 11.9 1.0 OG B:SER289 2.2 11.3 1.0 O B:HOH448 2.2 12.6 1.0 O B:HOH449 2.2 12.2 1.0 O B:HOH447 2.2 9.9 1.0 CG B:ASP287 3.1 14.2 1.0 CB B:SER289 3.2 11.4 1.0 C B:ASP270 3.3 11.1 1.0 OD2 B:ASP287 3.5 14.0 1.0 N B:SER289 3.9 11.8 1.0 CA B:ASP270 4.0 11.5 1.0 OD1 B:ASP80 4.0 15.3 1.0 OD2 B:ASP80 4.0 14.5 1.0 O B:ASN271 4.1 11.5 1.0 O B:HOH36 4.1 17.8 1.0 CA B:SER289 4.2 11.5 1.0 O B:TRP77 4.3 12.5 1.0 N B:ASP287 4.3 11.6 1.0 C B:ASN271 4.3 12.9 1.0 N B:ASN271 4.4 11.1 1.0 CB B:ASP287 4.4 11.5 1.0 OD1 B:ASP286 4.4 13.2 1.0 CB B:ASN271 4.4 11.5 1.0 CG B:ASP80 4.4 14.8 1.0 CB B:ASP270 4.5 12.3 1.0 CA B:ASN271 4.6 11.1 1.0 O B:HOH14 4.6 15.9 1.0 CA B:ASP287 4.8 11.2 1.0 N B:ASN288 4.8 11.1 1.0 O B:HOH22 4.8 18.5 1.0 C B:ASP287 4.9 12.4 1.0 N B:THR272 5.0 11.4 1.0

K.Palani, S.K.Burley, S.Swaminathan. Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum To Be Published.