Atomistry » Magnesium » PDB 3gx3-3hd1 » 3gyb
Atomistry »
  Magnesium »
    PDB 3gx3-3hd1 »
      3gyb »

Magnesium in PDB 3gyb: Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum

Protein crystallography data

The structure of Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum, PDB code: 3gyb was solved by K.Palani, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.55 / 1.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 38.073, 61.882, 65.604, 115.83, 106.37, 90.50
R / Rfree (%) 21.5 / 23.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum (pdb code 3gyb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum, PDB code: 3gyb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3gyb

Go back to Magnesium Binding Sites List in 3gyb
Magnesium binding site 1 out of 2 in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1

b:12.6
occ:1.00
OD1 A:ASP287 2.1 10.8 1.0
O A:ASP270 2.2 11.8 1.0
O A:HOH463 2.2 12.8 1.0
O A:HOH464 2.2 11.7 1.0
OG A:SER289 2.2 12.6 1.0
O A:HOH465 2.2 12.3 1.0
CG A:ASP287 3.1 11.7 1.0
CB A:SER289 3.2 12.9 1.0
C A:ASP270 3.3 11.8 1.0
OD2 A:ASP287 3.4 13.4 1.0
N A:SER289 3.9 13.0 1.0
CA A:ASP270 4.0 10.8 1.0
O A:ASN271 4.0 12.2 1.0
OD2 A:ASP80 4.0 13.7 1.0
OD1 A:ASP80 4.1 13.8 1.0
O A:HOH357 4.1 20.4 1.0
CA A:SER289 4.2 12.5 1.0
C A:ASN271 4.3 13.5 1.0
O A:TRP77 4.3 12.2 1.0
N A:ASP287 4.3 12.6 1.0
N A:ASN271 4.4 12.2 1.0
CB A:ASP287 4.4 11.8 1.0
CB A:ASN271 4.5 13.2 1.0
OD1 A:ASP286 4.5 15.6 1.0
CB A:ASP270 4.5 12.1 1.0
CG A:ASP80 4.5 14.0 1.0
CA A:ASN271 4.6 12.7 1.0
O A:HOH16 4.7 14.2 1.0
CA A:ASP287 4.8 11.9 1.0
N A:ASN288 4.8 12.2 1.0
C A:ASP287 4.8 12.6 1.0
N A:THR272 4.9 12.5 1.0
O A:HOH356 4.9 23.4 1.0

Magnesium binding site 2 out of 2 in 3gyb

Go back to Magnesium Binding Sites List in 3gyb
Magnesium binding site 2 out of 2 in the Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2

b:12.5
occ:1.00
OD1 B:ASP287 2.1 10.4 1.0
O B:ASP270 2.1 11.9 1.0
OG B:SER289 2.2 11.3 1.0
O B:HOH448 2.2 12.6 1.0
O B:HOH449 2.2 12.2 1.0
O B:HOH447 2.2 9.9 1.0
CG B:ASP287 3.1 14.2 1.0
CB B:SER289 3.2 11.4 1.0
C B:ASP270 3.3 11.1 1.0
OD2 B:ASP287 3.5 14.0 1.0
N B:SER289 3.9 11.8 1.0
CA B:ASP270 4.0 11.5 1.0
OD1 B:ASP80 4.0 15.3 1.0
OD2 B:ASP80 4.0 14.5 1.0
O B:ASN271 4.1 11.5 1.0
O B:HOH36 4.1 17.8 1.0
CA B:SER289 4.2 11.5 1.0
O B:TRP77 4.3 12.5 1.0
N B:ASP287 4.3 11.6 1.0
C B:ASN271 4.3 12.9 1.0
N B:ASN271 4.4 11.1 1.0
CB B:ASP287 4.4 11.5 1.0
OD1 B:ASP286 4.4 13.2 1.0
CB B:ASN271 4.4 11.5 1.0
CG B:ASP80 4.4 14.8 1.0
CB B:ASP270 4.5 12.3 1.0
CA B:ASN271 4.6 11.1 1.0
O B:HOH14 4.6 15.9 1.0
CA B:ASP287 4.8 11.2 1.0
N B:ASN288 4.8 11.1 1.0
O B:HOH22 4.8 18.5 1.0
C B:ASP287 4.9 12.4 1.0
N B:THR272 5.0 11.4 1.0

Reference:

K.Palani, S.K.Burley, S.Swaminathan. Crystal Structure of A Laci-Family Transcriptional Regulatory Protein From Corynebacterium Glutamicum To Be Published.
Page generated: Mon Dec 14 08:12:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy