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Magnesium in PDB 3hb1: Crystal Structure of Ed-EYA2 Complexed with ALF3

Enzymatic activity of Crystal Structure of Ed-EYA2 Complexed with ALF3

All present enzymatic activity of Crystal Structure of Ed-EYA2 Complexed with ALF3:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of Ed-EYA2 Complexed with ALF3, PDB code: 3hb1 was solved by S.K.Jung, D.G.Jeong, S.E.Ryu, S.J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.51
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 183.941, 183.941, 119.976, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 24

Other elements in 3hb1:

The structure of Crystal Structure of Ed-EYA2 Complexed with ALF3 also contains other interesting chemical elements:

Fluorine (F) 12 atoms
Aluminium (Al) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ed-EYA2 Complexed with ALF3 (pdb code 3hb1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Ed-EYA2 Complexed with ALF3, PDB code: 3hb1:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 3hb1

Go back to Magnesium Binding Sites List in 3hb1
Magnesium binding site 1 out of 4 in the Crystal Structure of Ed-EYA2 Complexed with ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ed-EYA2 Complexed with ALF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:26.8
occ:1.00
O A:HOH143 1.8 36.7 1.0
OD2 A:ASP274 2.0 34.0 1.0
OD1 A:ASP502 2.1 30.6 1.0
F1 A:AF3801 2.2 45.1 1.0
O A:ASP276 2.2 31.8 1.0
CG A:ASP274 3.0 33.8 1.0
CG A:ASP502 3.0 28.5 1.0
OD2 A:ASP502 3.3 25.6 1.0
C A:ASP276 3.4 29.4 1.0
OD1 A:ASP274 3.4 37.4 1.0
OE2 A:GLU506 3.5 44.1 1.0
AL A:AF3801 3.6 41.8 1.0
OG1 A:THR278 3.8 23.2 1.0
CA A:ASP276 4.1 30.6 1.0
O A:HOH36 4.2 22.1 1.0
CB A:ASP276 4.2 30.5 1.0
N A:ASP276 4.2 30.1 1.0
CB A:ASP274 4.3 29.7 1.0
CB A:GLU277 4.3 24.0 1.0
CB A:ASP502 4.4 28.7 1.0
N A:GLU277 4.4 26.9 1.0
N A:GLY503 4.4 30.9 1.0
CD A:GLU506 4.5 39.2 1.0
O A:HOH125 4.5 47.4 1.0
F3 A:AF3801 4.6 42.3 1.0
N A:THR278 4.6 22.5 1.0
C A:GLU277 4.6 23.8 1.0
CA A:GLU277 4.6 24.7 1.0
N A:ASP502 4.7 27.5 1.0
OE1 A:GLU506 4.7 40.6 1.0
O A:HOH75 4.8 35.7 1.0
CB A:THR278 4.8 22.3 1.0
F2 A:AF3801 4.8 44.5 1.0
C A:LEU275 4.8 28.4 1.0
CA A:ASP502 4.9 28.7 1.0
N A:LEU275 5.0 26.5 1.0
C A:ASP502 5.0 30.0 1.0

Magnesium binding site 2 out of 4 in 3hb1

Go back to Magnesium Binding Sites List in 3hb1
Magnesium binding site 2 out of 4 in the Crystal Structure of Ed-EYA2 Complexed with ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Ed-EYA2 Complexed with ALF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg702

b:35.2
occ:1.00
F1 B:AF3802 2.0 46.0 1.0
OD1 B:ASP502 2.0 35.7 1.0
O B:HOH137 2.0 37.4 1.0
O B:ASP276 2.1 35.2 1.0
OD2 B:ASP274 2.3 39.4 1.0
CG B:ASP502 2.9 34.2 1.0
OD2 B:ASP502 3.1 35.2 1.0
CG B:ASP274 3.3 40.9 1.0
C B:ASP276 3.3 35.5 1.0
AL B:AF3802 3.6 46.5 1.0
OD1 B:ASP274 3.6 43.9 1.0
OG1 B:THR278 4.0 29.4 1.0
CB B:ASP276 4.1 40.8 1.0
CA B:ASP276 4.1 36.3 1.0
O B:HOH135 4.1 34.9 1.0
N B:GLY503 4.3 41.7 1.0
CB B:ASP502 4.3 35.2 1.0
N B:GLU277 4.3 34.2 1.0
CB B:GLU277 4.3 32.8 1.0
N B:ASP276 4.4 35.3 1.0
OE2 B:GLU506 4.4 50.3 1.0
F2 B:AF3802 4.6 50.2 1.0
CB B:ASP274 4.6 38.1 1.0
CA B:GLU277 4.6 32.7 1.0
OE1 B:GLU506 4.6 47.8 1.0
N B:ASP502 4.7 35.3 1.0
C B:GLU277 4.7 32.0 1.0
F3 B:AF3802 4.7 44.9 1.0
C B:ASP502 4.8 39.5 1.0
CA B:GLY503 4.8 42.6 1.0
CD B:GLU506 4.9 48.7 1.0
CA B:ASP502 4.9 37.0 1.0
N B:THR278 4.9 29.5 1.0

Magnesium binding site 3 out of 4 in 3hb1

Go back to Magnesium Binding Sites List in 3hb1
Magnesium binding site 3 out of 4 in the Crystal Structure of Ed-EYA2 Complexed with ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Ed-EYA2 Complexed with ALF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg703

b:24.1
occ:1.00
OD1 C:ASP502 2.1 38.5 1.0
O C:HOH142 2.1 42.5 1.0
F1 C:AF3803 2.1 49.9 1.0
OD2 C:ASP274 2.1 39.2 1.0
O C:ASP276 2.2 37.7 1.0
CG C:ASP502 2.9 36.1 1.0
CG C:ASP274 3.0 39.0 1.0
OD2 C:ASP502 3.1 36.0 1.0
AL C:AF3803 3.3 48.0 1.0
OD1 C:ASP274 3.3 43.5 1.0
C C:ASP276 3.4 37.2 1.0
F3 C:AF3803 3.7 49.2 1.0
OE2 C:GLU506 3.7 53.8 1.0
O C:HOH131 4.1 34.2 1.0
CA C:ASP276 4.1 38.1 1.0
OG1 C:THR278 4.1 32.1 1.0
CB C:ASP276 4.2 40.7 1.0
N C:ASP276 4.2 37.2 1.0
N C:GLY503 4.2 37.2 1.0
CB C:ASP274 4.4 35.7 1.0
CB C:ASP502 4.4 34.5 1.0
CD C:GLU506 4.4 50.1 1.0
N C:GLU277 4.5 35.5 1.0
CB C:GLU277 4.5 32.9 1.0
OE1 C:GLU506 4.5 52.1 1.0
N C:ASP502 4.7 33.1 1.0
F2 C:AF3803 4.8 44.7 1.0
C C:GLU277 4.8 33.5 1.0
CA C:GLY503 4.8 38.6 1.0
CA C:GLU277 4.8 33.4 1.0
N C:THR278 4.8 32.8 1.0
C C:ASP502 4.9 35.9 1.0
CA C:ASP502 4.9 34.2 1.0
C C:LEU275 5.0 36.7 1.0

Magnesium binding site 4 out of 4 in 3hb1

Go back to Magnesium Binding Sites List in 3hb1
Magnesium binding site 4 out of 4 in the Crystal Structure of Ed-EYA2 Complexed with ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Ed-EYA2 Complexed with ALF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg704

b:32.5
occ:1.00
F1 D:AF3804 1.9 48.6 1.0
OD2 D:ASP274 1.9 42.2 1.0
O D:HOH139 2.1 25.4 1.0
O D:ASP276 2.2 34.9 1.0
OD1 D:ASP502 2.3 37.7 1.0
CG D:ASP274 2.8 41.3 1.0
OD1 D:ASP274 3.1 44.8 1.0
CG D:ASP502 3.2 35.7 1.0
AL D:AF3804 3.3 47.6 1.0
C D:ASP276 3.3 36.1 1.0
OD2 D:ASP502 3.4 36.8 1.0
OE2 D:GLU506 3.4 47.5 1.0
CA D:ASP276 3.9 36.4 1.0
OG1 D:THR278 4.0 28.3 1.0
CB D:ASP276 4.0 39.4 1.0
N D:ASP276 4.1 35.1 1.0
O D:HOH140 4.1 44.3 1.0
CB D:ASP274 4.1 34.7 1.0
F3 D:AF3804 4.2 50.2 1.0
CD D:GLU506 4.4 45.1 1.0
F2 D:AF3804 4.4 44.0 1.0
N D:GLU277 4.4 34.7 1.0
N D:GLY503 4.5 36.4 1.0
CB D:ASP502 4.6 33.4 1.0
CB D:GLU277 4.6 33.6 1.0
OE1 D:GLU506 4.6 46.4 1.0
C D:GLU277 4.8 32.1 1.0
C D:LEU275 4.8 33.0 1.0
CA D:GLU277 4.8 33.3 1.0
N D:ASP502 4.8 30.9 1.0
N D:THR278 4.8 30.0 1.0
N D:LEU275 4.9 32.7 1.0
CB D:THR278 5.0 26.2 1.0

Reference:

S.K.Jung, D.G.Jeong, S.J.Chung, J.H.Kim, B.C.Park, N.K.Tonks, S.E.Ryu, S.J.Kim. Crystal Structure of Ed-EYA2: Insight Into Dual Roles As A Protein Tyrosine Phosphatase and A Transcription Factor Faseb J. V. 24 560 2010.
ISSN: ISSN 0892-6638
PubMed: 19858093
DOI: 10.1096/FJ.09-143891
Page generated: Mon Dec 14 08:13:22 2020

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