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Magnesium in PDB 3hyl: Crystal Structure of Transketolase From Bacillus Anthracis

Enzymatic activity of Crystal Structure of Transketolase From Bacillus Anthracis

All present enzymatic activity of Crystal Structure of Transketolase From Bacillus Anthracis:
2.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Transketolase From Bacillus Anthracis, PDB code: 3hyl was solved by N.Maltseva, Y.Kim, K.Kwon, A.Joachimiak, W.F.Anderson, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.35 / 2.16
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 138.801, 70.975, 145.795, 90.00, 117.35, 90.00
R / Rfree (%) 17.6 / 23

Other elements in 3hyl:

The structure of Crystal Structure of Transketolase From Bacillus Anthracis also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Transketolase From Bacillus Anthracis (pdb code 3hyl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Transketolase From Bacillus Anthracis, PDB code: 3hyl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3hyl

Go back to Magnesium Binding Sites List in 3hyl
Magnesium binding site 1 out of 2 in the Crystal Structure of Transketolase From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Transketolase From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg675

b:43.6
occ:1.00
O A:ILE189 2.0 57.1 1.0
O A:HOH867 2.1 46.5 1.0
O A:HOH866 2.3 37.1 1.0
OD1 A:ASN187 2.4 53.8 1.0
OD2 A:ASP157 2.5 50.5 1.0
CL A:CL676 2.7 63.3 1.0
C A:ILE189 3.2 56.8 1.0
CG A:ASN187 3.2 54.5 1.0
ND2 A:ASN187 3.4 49.1 1.0
CG A:ASP157 3.6 50.4 1.0
CB A:ASP157 4.0 46.6 1.0
CA A:ILE189 4.0 55.5 1.0
N A:ILE189 4.0 54.6 1.0
N A:SER190 4.1 55.4 1.0
CA A:SER190 4.2 54.1 1.0
N A:ASP157 4.2 46.9 1.0
O A:HOH915 4.3 55.3 1.0
CB A:ILE189 4.4 56.5 1.0
CG2 A:ILE189 4.6 55.7 1.0
OD1 A:ASP157 4.7 49.0 1.0
CB A:ASN187 4.7 51.6 1.0
CA A:ASP157 4.8 45.0 1.0
O A:ASP185 4.8 51.3 1.0
N A:ASN187 4.9 53.0 1.0

Magnesium binding site 2 out of 2 in 3hyl

Go back to Magnesium Binding Sites List in 3hyl
Magnesium binding site 2 out of 2 in the Crystal Structure of Transketolase From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Transketolase From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg670

b:42.9
occ:1.00
O B:HOH798 2.1 45.9 1.0
OD1 B:ASN187 2.3 46.5 1.0
OD2 B:ASP157 2.3 45.7 1.0
O B:ILE189 2.4 38.9 1.0
O1 B:FMT668 2.4 43.0 1.0
O B:HOH799 2.5 41.6 1.0
C B:FMT668 2.9 45.6 1.0
CG B:ASN187 2.9 47.6 1.0
ND2 B:ASN187 2.9 40.4 1.0
CG B:ASP157 3.3 43.0 1.0
C B:ILE189 3.6 42.2 1.0
CB B:ASP157 3.9 38.3 1.0
N B:ASP157 3.9 44.4 1.0
O2 B:FMT668 4.0 47.5 1.0
O B:ASP185 4.1 50.1 1.0
OD1 B:ASP157 4.3 46.1 1.0
N B:ILE189 4.3 45.9 1.0
CB B:ASN187 4.4 49.8 1.0
CA B:ILE189 4.4 46.5 1.0
N B:ASN187 4.5 56.7 1.0
CA B:ASP157 4.6 42.6 1.0
N B:SER190 4.6 40.5 1.0
CB B:ILE189 4.6 49.2 1.0
CA B:SER190 4.7 44.6 1.0
CA B:GLY156 4.7 34.9 1.0
CA B:ASN187 4.8 55.3 1.0
C B:GLY156 4.8 41.0 1.0
CG2 B:ILE249 4.9 77.1 1.0
C B:ASN187 4.9 54.8 1.0

Reference:

N.Maltseva, Y.Kim, K.Kwon, A.Joachimiak, W.F.Anderson. Crystal Structure of Transketolase From Bacillus Anthracis To Be Published.
Page generated: Mon Dec 14 08:15:13 2020

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