Atomistry » Magnesium » PDB 3hx0-3i5x » 3hzm
Atomistry »
  Magnesium »
    PDB 3hx0-3i5x »
      3hzm »

Magnesium in PDB 3hzm: Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo

Protein crystallography data

The structure of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo, PDB code: 3hzm was solved by C.L.Brooks, S.Muller-Loennies, S.N.Borisova, L.Brade, P.Kosma, T.Hirama, C.R.Mackenzie, H.Brade, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.65 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.000, 81.800, 127.980, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.9

Other elements in 3hzm:

The structure of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo (pdb code 3hzm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo, PDB code: 3hzm:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3hzm

Go back to Magnesium Binding Sites List in 3hzm
Magnesium binding site 1 out of 3 in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg214

b:29.6
occ:1.00
OE2 A:GLU55 2.5 39.8 1.0
O A:HOH341 2.8 37.8 1.0
CD A:GLU55 3.3 42.1 1.0
OE1 A:GLU55 3.5 41.2 1.0
N A:SER56 4.0 31.6 1.0
OH A:TYR49 4.0 29.0 1.0
CB A:SER56 4.1 46.2 1.0
CG A:GLU55 4.6 28.1 1.0
CE2 B:TYR100D 4.6 42.2 1.0
CZ B:TYR100D 4.6 67.2 1.0
OH B:TYR100D 4.7 60.4 1.0
CA A:SER56 4.7 36.6 1.0
CE1 A:TYR49 4.7 30.4 1.0
CA A:GLU55 4.8 26.1 1.0
CZ A:TYR49 4.8 27.7 1.0
C A:GLU55 4.9 30.1 1.0

Magnesium binding site 2 out of 3 in 3hzm

Go back to Magnesium Binding Sites List in 3hzm
Magnesium binding site 2 out of 3 in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg216

b:32.0
occ:1.00
O A:HOH277 2.0 31.8 1.0
O A:HOH242 2.2 32.1 1.0
ND2 A:ASN137 2.2 23.9 1.0
CE1 B:HIS163 2.3 29.3 1.0
O A:HOH335 2.6 32.8 1.0
NE2 B:HIS163 2.8 44.1 1.0
CG A:ASN137 3.4 38.5 1.0
ND1 B:HIS163 3.6 39.1 1.0
OD1 A:ASP169 3.7 36.5 1.0
OD1 A:ASP166 3.7 41.5 1.0
OG1 A:THR171 3.8 25.1 1.0
OD1 A:ASN137 4.1 55.7 1.0
CG A:ASP166 4.1 36.5 1.0
CD2 B:HIS163 4.2 33.4 1.0
CB A:ASP166 4.2 32.8 1.0
OD2 A:ASP169 4.2 27.9 1.0
CG A:ASP169 4.4 38.3 1.0
OG A:SER173 4.4 23.6 1.0
CB A:ASN137 4.5 20.9 1.0
CG B:HIS163 4.5 34.0 1.0
O A:HOH350 4.5 33.0 1.0
CA A:ASN137 4.6 27.6 1.0
N A:ASN137 4.9 20.4 1.0
OD2 A:ASP166 4.9 38.1 1.0

Magnesium binding site 3 out of 3 in 3hzm

Go back to Magnesium Binding Sites List in 3hzm
Magnesium binding site 3 out of 3 in the Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of S73-2 Antibody in Complex with Antigen Kdo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg217

b:41.1
occ:1.00
OE2 A:GLU184 3.1 42.5 1.0
NE2 A:HIS188 3.4 19.9 1.0
OE1 A:GLU184 3.8 23.1 1.0
CD A:GLU184 3.9 34.6 1.0
CE1 A:HIS188 3.9 35.9 1.0
NH1 A:ARG154 3.9 44.4 1.0
CD2 A:HIS188 4.4 22.1 1.0
ND1 A:HIS188 4.9 25.2 1.0

Reference:

C.L.Brooks, S.Muller-Loennies, S.N.Borisova, L.Brade, P.Kosma, T.Hirama, C.R.Mackenzie, H.Brade, S.V.Evans. Antibodies Raised Against Chlamydial Lipopolysaccharide Antigens Reveal Convergence in Germline Gene Usage and Differential Epitope Recognition Biochemistry V. 49 570 2010.
ISSN: ISSN 0006-2960
PubMed: 20000757
DOI: 10.1021/BI9011308
Page generated: Mon Dec 14 08:15:17 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy