Magnesium in PDB 3i5x: Structure of MSS116P Bound to Ssrna and Amp-Pnp

Protein crystallography data

The structure of Structure of MSS116P Bound to Ssrna and Amp-Pnp, PDB code: 3i5x was solved by M.Del Campo, A.M.Lambowitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.00 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.540, 126.524, 55.523, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of MSS116P Bound to Ssrna and Amp-Pnp (pdb code 3i5x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of MSS116P Bound to Ssrna and Amp-Pnp, PDB code: 3i5x:

Magnesium binding site 1 out of 1 in 3i5x

Go back to Magnesium Binding Sites List in 3i5x
Magnesium binding site 1 out of 1 in the Structure of MSS116P Bound to Ssrna and Amp-Pnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of MSS116P Bound to Ssrna and Amp-Pnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg900

b:20.0
occ:1.00
O3G A:ANP1000 1.9 2.9 1.0
O1B A:ANP1000 2.0 5.1 1.0
O A:HOH1001 2.1 9.2 1.0
O A:HOH1021 2.1 14.9 1.0
O A:HOH1067 2.1 14.4 1.0
O A:HOH1010 2.2 17.3 1.0
PB A:ANP1000 3.2 6.9 1.0
PG A:ANP1000 3.2 4.6 1.0
N3B A:ANP1000 3.5 6.0 1.0
OD2 A:ASP267 3.8 21.9 1.0
OE2 A:GLU268 3.9 14.8 1.0
OG1 A:THR159 4.0 14.9 1.0
OD1 A:ASP267 4.0 18.6 1.0
O1G A:ANP1000 4.0 5.1 1.0
CA A:GLY439 4.1 14.4 1.0
O2A A:ANP1000 4.2 6.8 1.0
O3A A:ANP1000 4.2 6.2 1.0
CG A:ASP267 4.3 18.8 1.0
O2B A:ANP1000 4.3 5.3 1.0
O A:GLY439 4.4 14.2 1.0
O2G A:ANP1000 4.4 4.4 1.0
O1A A:ANP1000 4.5 8.3 1.0
CE A:LYS158 4.5 14.7 1.0
PA A:ANP1000 4.5 7.2 1.0
CB A:LYS158 4.7 15.0 1.0
C A:GLY439 4.8 14.2 1.0
O A:HOH1051 4.8 18.6 1.0
NZ A:LYS158 4.9 12.3 1.0
N A:THR159 4.9 14.6 1.0

Reference:

M.Del Campo, A.M.Lambowitz. Structure of the Yeast Dead Box Protein MSS116P Reveals Two Wedges That Crimp Rna Mol.Cell V. 35 598 2009.
ISSN: ISSN 1097-2765
PubMed: 19748356
DOI: 10.1016/J.MOLCEL.2009.07.032
Page generated: Mon Dec 14 08:16:14 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy