Magnesium in PDB 3ibq: Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp

All present enzymatic activity of Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp:
2.7.1.35;

The structure of Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp, PDB code: 3ibq was solved by A.Bagaria, D.Kumaran, S.K.Burley, S.Swaminathan, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.46 / 2.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	64.357, 69.576, 132.369, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 21.9

The binding sites of Magnesium atom in the Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp (pdb code 3ibq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp, PDB code: 3ibq:

Magnesium binding site 1 out of 1 in the Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg282 b:40.6 occ:1.00 O A:HOH447 2.1 17.3 1.0 O A:HOH448 2.2 37.6 1.0 O A:HOH427 2.2 19.1 1.0 O A:HOH358 2.2 41.3 1.0 O1B A:ATP281 2.3 65.3 1.0 O A:HOH348 2.5 28.2 1.0 O2B A:ATP281 2.7 64.2 1.0 PB A:ATP281 2.8 64.5 1.0 O3A A:ATP281 3.8 60.1 1.0 O3G A:ATP281 4.1 68.4 1.0 OD2 A:ASP105 4.1 14.8 1.0 OD1 A:ASP105 4.1 16.6 1.0 ND2 A:ASN139 4.2 20.8 1.0 O3B A:ATP281 4.2 66.2 1.0 OE1 A:GLU142 4.2 16.3 1.0 OE2 A:GLU142 4.4 15.0 1.0 O A:HOH318 4.5 18.6 1.0 CA A:GLY212 4.6 8.0 1.0 CG A:ASP105 4.6 13.5 1.0 PG A:ATP281 4.8 69.4 1.0 CD A:GLU142 4.8 15.4 1.0 CB A:ASN139 4.8 15.2 1.0 O2G A:ATP281 4.8 69.2 1.0 CG A:ASN139 4.9 17.9 1.0 OG1 A:THR177 4.9 12.9 1.0 O A:HOH399 5.0 27.0 1.0 CG2 A:VAL107 5.0 11.7 1.0

A.Bagaria, D.Kumaran, S.K.Burley, S.Swaminathan. Crystal Structure of Pyridoxal Kinase From Lactobacillus Plantarum in Complex with Atp To Be Published.