Magnesium in PDB 3ie7: The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A

The structure of The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A, PDB code: 3ie7 was solved by L.Satyanarayana, S.K.Burley, S.Swaminathan, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.85 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	146.108, 46.244, 57.762, 90.00, 102.08, 90.00
R / Rfree (%)	21.9 / 23.9

The binding sites of Magnesium atom in the The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A (pdb code 3ie7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A, PDB code: 3ie7:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:40.7 occ:1.00 O A:HOH504 2.1 29.2 1.0 O A:HOH505 2.1 36.6 1.0 O1B A:ATP900 2.1 21.9 1.0 O1A A:ATP900 2.2 22.2 1.0 PB A:ATP900 3.4 22.8 1.0 PA A:ATP900 3.4 22.9 1.0 O3A A:ATP900 3.7 18.0 1.0 O A:HOH477 3.8 38.0 1.0 O3B A:ATP900 4.0 27.6 1.0 O A:HOH360 4.1 24.7 1.0 O2A A:ATP900 4.2 23.7 1.0 O3G A:ATP900 4.4 39.2 1.0 O A:HOH490 4.5 36.2 1.0 O A:HOH378 4.6 29.3 1.0 ND2 A:ASN187 4.7 25.4 1.0 O2B A:ATP900 4.7 21.9 1.0 PG A:ATP900 4.8 33.1 1.0 O A:ASP246 4.8 27.7 1.0 O5' A:ATP900 5.0 27.7 1.0 OD1 A:ASP246 5.0 34.0 1.0

Magnesium binding site 2 out of 3 in the The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg319 b:24.1 occ:1.00 O A:HOH500 2.0 17.4 1.0 O A:HOH502 2.0 19.9 1.0 O2B A:ATP900 2.1 21.9 1.0 O A:HOH380 2.1 26.2 1.0 O A:HOH503 2.1 26.9 1.0 O1G A:ATP900 2.3 38.8 1.0 PB A:ATP900 3.2 22.8 1.0 PG A:ATP900 3.3 33.1 1.0 O3B A:ATP900 3.3 27.6 1.0 O2G A:ATP900 3.8 40.1 1.0 NZ A:LYS185 4.0 17.0 1.0 OD2 A:ASP167 4.1 22.8 1.0 OE1 A:GLU190 4.1 22.8 1.0 O1B A:ATP900 4.1 21.9 1.0 O A:HOH542 4.2 42.6 1.0 OE2 A:GLU190 4.2 24.7 1.0 OD1 A:ASP167 4.2 20.8 1.0 NZ A:LYS39 4.2 30.7 1.0 O A:HOH490 4.2 36.2 1.0 O A:HOH428 4.3 25.4 1.0 O A:HOH533 4.3 44.6 1.0 O3A A:ATP900 4.5 18.0 1.0 CE A:LYS185 4.5 15.8 1.0 CD A:GLU190 4.5 24.3 1.0 ND2 A:ASN187 4.5 25.4 1.0 CG A:ASP167 4.5 22.6 1.0 CE A:LYS39 4.6 30.9 1.0 CA A:GLY250 4.6 18.4 1.0 O3G A:ATP900 4.6 39.2 1.0 OD1 A:ASP251 4.8 27.4 1.0

Magnesium binding site 3 out of 3 in the The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg320 b:27.1 occ:1.00 O A:HOH341 3.2 26.0 1.0 O A:HOH366 3.3 33.0 1.0 N A:LYS39 3.4 21.9 1.0 O1 A:GOL501 3.5 54.6 1.0 CA A:GLY139 3.5 24.2 1.0 CA A:GLY38 3.6 23.1 1.0 NH2 A:ARG90 3.7 23.9 1.0 CG A:LYS39 3.8 24.9 1.0 C A:GLY38 4.0 22.2 1.0 O A:ASN8 4.0 19.4 1.0 N A:SER140 4.1 27.5 1.0 C A:GLY139 4.2 27.1 1.0 CB A:LYS39 4.2 21.5 1.0 CA A:LYS39 4.4 20.4 1.0 CD A:LYS39 4.5 30.2 1.0 N A:GLY38 4.5 21.9 1.0 O A:SER140 4.5 26.6 1.0 O A:ALA138 4.6 23.6 1.0 C1 A:GOL501 4.7 54.0 1.0 N A:GLY139 4.7 23.5 1.0 CB A:ASN8 4.7 19.8 1.0 C A:ASN8 4.9 18.2 1.0 CZ A:ARG90 4.9 22.4 1.0

L.Satyanarayana, S.K.Burley, S.Swaminathan. The Crystal Structure of Phosphofructokinase (LIN2199) From Listeria Innocua in Complex with Atp at 1.6A To Be Published.