Atomistry » Magnesium » PDB 3ig8-3irw » 3ilf
Atomistry »
  Magnesium »
    PDB 3ig8-3irw »
      3ilf »

Magnesium in PDB 3ilf: Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose

Protein crystallography data

The structure of Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose, PDB code: 3ilf was solved by J.H.Hehemann, G.Correc, T.Barbeyron, W.Helbert, G.Michel, M.Czjzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.34 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.090, 68.378, 71.268, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 20.5

Other elements in 3ilf:

The structure of Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose (pdb code 3ilf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose, PDB code: 3ilf:

Magnesium binding site 1 out of 1 in 3ilf

Go back to Magnesium Binding Sites List in 3ilf
Magnesium binding site 1 out of 1 in the Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Porphyranase A (Pora) in Complex with Neo- Porphyrotetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg279

b:8.0
occ:1.00
O A:ALA69 2.7 8.1 1.0
CL A:CL280 2.8 25.9 1.0
O A:HOH556 2.8 21.0 1.0
OD2 A:ASP51 2.8 10.7 1.0
CA A:PHE70 3.4 7.1 1.0
CB A:PHE70 3.5 7.7 1.0
CB A:ASP51 3.6 4.1 1.0
CG A:ASP51 3.6 11.1 1.0
C A:ALA69 3.7 9.4 1.0
CA A:GLY67 4.0 10.4 1.0
CG2 A:ILE44 4.0 10.6 1.0
N A:PHE70 4.0 8.1 1.0
O A:GLY67 4.3 11.2 1.0
O A:HOH501 4.4 43.5 1.0
CB A:ILE44 4.4 10.3 1.0
O A:HOH350 4.5 24.1 1.0
C A:GLY67 4.5 10.6 1.0
O A:HOH367 4.5 29.9 1.0
C A:PHE70 4.5 7.7 1.0
N A:VAL71 4.6 8.2 1.0
O A:HOH502 4.8 38.8 1.0
O A:HOH581 4.9 25.4 1.0
N A:GLY67 4.9 9.2 1.0
OD1 A:ASP51 4.9 7.7 1.0
CD1 A:ILE44 4.9 8.4 1.0
CG A:PHE70 5.0 8.8 1.0

Reference:

J.H.Hehemann, G.Correc, T.Barbeyron, W.Helbert, M.Czjzek, G.Michel. Transfer of Carbohydrate-Active Enzymes From Marine Bacteria to Japanese Gut Microbiota. Nature V. 464 908 2010.
ISSN: ISSN 0028-0836
PubMed: 20376150
DOI: 10.1038/NATURE08937
Page generated: Mon Dec 14 08:17:15 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy