Atomistry » Magnesium » PDB 3igi-3is5 » 3ip0
Atomistry »
  Magnesium »
    PDB 3igi-3is5 »
      3ip0 »

Magnesium in PDB 3ip0: Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin

Enzymatic activity of Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin

All present enzymatic activity of Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin:
2.7.6.3;

Protein crystallography data

The structure of Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin, PDB code: 3ip0 was solved by J.Blaszczyk, X.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.20 / 0.89
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.470, 37.910, 57.850, 90.00, 117.18, 90.00
R / Rfree (%) 12.8 / 12.8

Other elements in 3ip0:

The structure of Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin (pdb code 3ip0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin, PDB code: 3ip0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3ip0

Go back to Magnesium Binding Sites List in 3ip0
Magnesium binding site 1 out of 2 in the Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg161

b:5.3
occ:1.00
OD1 A:ASP95 2.1 5.2 1.0
OD1 A:ASP97 2.1 5.3 1.0
O2A A:APC171 2.1 5.9 1.0
O A:HOH202 2.1 6.2 1.0
O A:HOH201 2.1 5.8 1.0
O2B A:APC171 2.1 5.2 1.0
HOB2 A:APC171 2.1 6.3 1.0
HOA2 A:APC171 2.8 7.1 1.0
CG A:ASP95 3.0 5.0 1.0
CG A:ASP97 3.1 5.1 1.0
PB A:APC171 3.2 5.4 1.0
PA A:APC171 3.2 5.9 1.0
OD2 A:ASP95 3.3 5.4 1.0
HH12 A:ARG82 3.4 9.3 0.4
H3A2 A:APC171 3.5 6.9 1.0
C3A A:APC171 3.5 5.7 1.0
MG A:MG162 3.5 5.4 1.0
OD2 A:ASP97 3.6 5.7 1.0
O5' A:APC171 3.8 6.0 1.0
HH22 A:ARG82 3.9 10.0 0.4
O A:HOH499 3.9 5.4 0.5
O1B A:APC171 4.0 6.5 1.0
O A:HOH264 4.1 14.4 1.0
OE2 A:GLU77 4.2 5.9 1.0
NH1 A:ARG82 4.2 7.7 0.4
HA A:ASP97 4.2 5.6 1.0
O A:LEU96 4.2 5.3 1.0
HH12 A:ARG92 4.3 10.3 0.5
O A:HOH499 4.3 8.6 0.5
H2 A:APC171 4.3 6.8 1.0
HA A:ASP95 4.4 6.1 1.0
O A:HOH501 4.4 7.5 0.6
CB A:ASP95 4.4 5.3 1.0
HH12 A:ARG92 4.4 8.4 0.5
H A:LEU96 4.4 5.8 1.0
O A:HOH216 4.4 7.2 1.0
CB A:ASP97 4.4 5.2 1.0
O3B A:APC171 4.5 5.2 1.0
O1A A:APC171 4.5 6.6 1.0
H3A1 A:APC171 4.6 6.9 1.0
C A:LEU96 4.6 4.8 1.0
HO6A A:HHS182 4.6 8.4 0.6
NH2 A:ARG82 4.6 8.3 0.4
O3G A:APC171 4.6 7.0 1.0
O6A A:HHS182 4.7 6.9 0.6
HH11 A:ARG82 4.7 9.3 0.4
CA A:ASP97 4.7 4.6 1.0
O1G A:APC171 4.7 5.8 1.0
N A:LEU96 4.7 4.8 1.0
HB2 A:ASP95 4.7 6.4 1.0
O A:HOH504 4.7 6.0 0.2
N3 A:APC171 4.8 5.7 1.0
C2 A:APC171 4.8 5.6 1.0
CA A:ASP95 4.8 5.0 1.0
O6A A:HHR181 4.8 4.5 0.5
N A:ASP97 4.8 4.5 1.0
NH1 A:ARG92 4.8 8.5 0.5
HH11 A:ARG92 4.9 10.3 0.5
HB3 A:ASP97 4.9 6.3 1.0
PG A:APC171 4.9 5.4 1.0
CZ A:ARG82 4.9 5.8 0.4
HH11 A:ARG92 5.0 8.4 0.5
NH1 A:ARG92 5.0 7.0 0.5
C A:ASP95 5.0 5.0 1.0
HO6 A:HHR181 5.0 5.5 0.5
HB3 A:ASP95 5.0 6.4 1.0

Magnesium binding site 2 out of 2 in 3ip0

Go back to Magnesium Binding Sites List in 3ip0
Magnesium binding site 2 out of 2 in the Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of E. Coli Hppk in Complex with Mgampcpp and 6- Hydroxymethylpterin/6-Carboxypterin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg162

b:5.4
occ:1.00
OD2 A:ASP97 2.0 5.7 1.0
O6A A:HHR181 2.0 4.5 0.5
O1G A:APC171 2.1 5.8 1.0
HOB2 A:APC171 2.1 6.3 1.0
O A:HOH203 2.1 6.4 1.0
O6A A:HHS182 2.1 6.9 0.6
O2B A:APC171 2.1 5.2 1.0
OD2 A:ASP95 2.1 5.4 1.0
HO6A A:HHS182 2.4 8.4 0.6
HO6 A:HHR181 2.4 5.5 0.5
CG A:ASP97 3.0 5.1 1.0
CG A:ASP95 3.2 5.0 1.0
PG A:APC171 3.2 5.4 1.0
PB A:APC171 3.2 5.4 1.0
C6A A:HHR181 3.3 4.4 0.5
HH12 A:ARG121 3.3 7.4 1.0
C6 A:HHS182 3.3 6.6 0.6
OD1 A:ASP97 3.3 5.3 1.0
O3B A:APC171 3.3 5.2 1.0
H6A2 A:HHR181 3.4 5.3 0.5
HH12 A:ARG92 3.4 8.4 0.5
MG A:MG161 3.5 5.3 1.0
OD1 A:ASP95 3.6 5.2 1.0
O3G A:APC171 3.9 7.0 1.0
H6A1 A:HHR181 3.9 5.3 0.5
O1B A:APC171 4.0 6.5 1.0
O A:HOH504 4.0 6.0 0.2
O A:HOH205 4.0 6.6 1.0
N5 A:HHS182 4.0 7.3 0.6
N5 A:HHR181 4.1 3.2 0.5
NH1 A:ARG121 4.1 6.1 1.0
NH1 A:ARG92 4.1 7.0 0.5
C6A A:HHS182 4.1 5.9 0.6
O A:HOH504 4.1 7.9 0.2
O6B A:HHS182 4.1 7.2 0.6
HH11 A:ARG92 4.2 8.4 0.5
C6 A:HHR181 4.2 3.9 0.5
HE3 A:MET124 4.2 9.4 0.4
O A:HOH243 4.2 9.5 1.0
HOG3 A:APC171 4.2 8.4 1.0
HH11 A:ARG121 4.3 7.4 1.0
CB A:ASP97 4.3 5.2 1.0
O2G A:APC171 4.4 6.0 1.0
HB2 A:ASP97 4.4 6.3 1.0
NE2 A:HIS115 4.4 6.1 1.0
CB A:ASP95 4.5 5.3 1.0
O A:HOH499 4.5 5.4 0.5
HB3 A:ASP95 4.5 6.4 1.0
HE1 A:MET124 4.6 9.4 0.4
O A:HOH202 4.6 6.2 1.0
O A:HOH219 4.6 8.3 1.0
HB3 A:ASP97 4.6 6.3 1.0
C3A A:APC171 4.7 5.7 1.0
H3A2 A:APC171 4.7 6.9 1.0
HH22 A:ARG121 4.7 9.4 1.0
HE3 A:MET124 4.8 7.1 0.6
HB2 A:ASP95 4.8 6.4 1.0
HOG2 A:APC171 4.8 7.2 1.0
CE A:MET124 4.8 7.8 0.4
O A:HOH499 4.9 8.6 0.5
O2A A:APC171 4.9 5.9 1.0
HE1 A:MET124 5.0 7.1 0.6

Reference:

J.Blaszczyk, Y.Li, G.Shi, H.Yan, X.Ji. Dynamic Roles of Arginine Residues 82 and 92 of Escherichia Coli 6-Hydroxymethyl-7,8-Dihydroptein Pyrophosphokinase: Crystallographic Studies Biochemistry V. 42 1573 2003.
ISSN: ISSN 0006-2960
PubMed: 12578370
DOI: 10.1021/BI0267994
Page generated: Wed Aug 14 16:13:00 2024

Last articles

Mg in 8C88
Mg in 8C8J
Mg in 8C8Q
Mg in 8C4E
Mg in 8C4C
Mg in 8C49
Mg in 8C8I
Mg in 8C87
Mg in 8C7C
Mg in 8C6K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy