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Magnesium in PDB 3iqx: Adp Complex of C.Therm. GET3 in Closed Form

Protein crystallography data

The structure of Adp Complex of C.Therm. GET3 in Closed Form, PDB code: 3iqx was solved by G.Bozkurt, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.28 / 3.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.750, 105.590, 137.350, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 29.5

Other elements in 3iqx:

The structure of Adp Complex of C.Therm. GET3 in Closed Form also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Adp Complex of C.Therm. GET3 in Closed Form (pdb code 3iqx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Adp Complex of C.Therm. GET3 in Closed Form, PDB code: 3iqx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3iqx

Go back to Magnesium Binding Sites List in 3iqx
Magnesium binding site 1 out of 2 in the Adp Complex of C.Therm. GET3 in Closed Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adp Complex of C.Therm. GET3 in Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg346

b:17.2
occ:1.00
OG1 A:THR41 2.1 30.1 1.0
O2B A:ADP1 2.3 20.7 1.0
PB A:ADP1 3.3 20.7 1.0
O3B A:ADP1 3.3 19.9 1.0
CB A:THR41 3.5 28.6 1.0
N A:THR41 4.0 26.4 1.0
OD1 A:ASP156 4.1 27.3 1.0
OD1 A:ASN68 4.2 39.9 1.0
O1B A:ADP1 4.2 20.3 1.0
CA A:THR41 4.2 26.6 1.0
CG2 A:THR41 4.4 29.0 1.0
O2A A:ADP1 4.4 19.2 1.0
OD2 A:ASP156 4.6 26.5 1.0
O3A A:ADP1 4.6 19.2 1.0
CB A:ASN68 4.6 36.9 1.0
CB A:LYS40 4.7 26.6 1.0
CG A:ASN68 4.7 39.3 1.0
CG A:ASP156 4.7 27.1 1.0
PA A:ADP1 4.9 18.7 1.0

Magnesium binding site 2 out of 2 in 3iqx

Go back to Magnesium Binding Sites List in 3iqx
Magnesium binding site 2 out of 2 in the Adp Complex of C.Therm. GET3 in Closed Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Adp Complex of C.Therm. GET3 in Closed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2

b:26.7
occ:1.00
O2B B:ADP1 1.7 24.8 1.0
OG1 B:THR41 2.1 38.2 1.0
PB B:ADP1 2.9 23.9 1.0
O3B B:ADP1 3.3 22.9 1.0
CB B:THR41 3.4 37.9 1.0
N B:THR41 3.7 36.1 1.0
O2A B:ADP1 3.9 23.7 1.0
O1B B:ADP1 3.9 22.8 1.0
O3A B:ADP1 4.1 25.0 1.0
CA B:THR41 4.1 37.1 1.0
PA B:ADP1 4.3 25.6 1.0
CG2 B:THR41 4.4 39.4 1.0
CB B:LYS40 4.4 35.9 1.0
O1A B:ADP1 4.5 24.5 1.0
NZ A:LYS35 4.5 45.2 1.0
OD2 B:ASP64 4.5 49.4 1.0
OD1 B:ASP156 4.6 39.1 1.0
C B:LYS40 4.8 35.7 1.0
CG B:ASN68 4.9 43.6 1.0
CE B:LYS40 4.9 37.5 1.0
OD1 B:ASN68 5.0 44.2 1.0
CB B:ASN68 5.0 43.2 1.0

Reference:

G.Bozkurt, G.Stjepanovic, F.Vilardi, S.Amlacher, K.Wild, G.Bange, V.Favaloro, K.Rippe, E.Hurt, B.Dobberstein, I.Sinning. Structural Insights Into Tail-Anchored Protein Binding and Membrane Insertion By GET3. Proc.Natl.Acad.Sci.Usa V. 106 21131 2009.
ISSN: ISSN 0027-8424
PubMed: 19948960
DOI: 10.1073/PNAS.0910223106
Page generated: Mon Dec 14 08:17:29 2020

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