Magnesium in PDB 3j0k: Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly

All present enzymatic activity of Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly:
2.7.7.6;

The structure of Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly also contains other interesting chemical elements:

Zinc

(Zn)

9 atoms

The binding sites of Magnesium atom in the Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly (pdb code 3j0k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly, PDB code: 3j0k:

Magnesium binding site 1 out of 1 in the Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Orientation of Rna Polymerase II Within the Human VP16-Mediator-Pol II-Tfiif Assembly within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1456 b:91.2 occ:1.00 OD1 A:ASP481 3.8 67.9 1.0 NH2 A:ARG446 4.1 48.2 1.0 OD1 A:ASP483 4.2 57.9 1.0 OD1 A:ASP485 4.3 45.3 1.0 OD2 A:ASP485 4.6 45.4 1.0 CG A:ASP481 4.6 63.1 1.0 OD2 A:ASP483 4.6 56.1 1.0 OD2 A:ASP481 4.7 63.5 1.0 CG A:ASP483 4.9 55.9 1.0 CG A:ASP485 4.9 45.4 1.0

C.Bernecky, P.Grob, C.C.Ebmeier, E.Nogales, D.J.Taatjes. Molecular Architecture of the Human Mediator-Rna Polymerase II-Tfiif Assembly. Plos Biol. V. 9 00603 2011.
ISSN: ISSN 1544-9173
PubMed: 21468301
DOI: 10.1371/JOURNAL.PBIO.1000603