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Magnesium in PDB 3j6e: Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp

Magnesium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Magnesium atom in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp (pdb code 3j6e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 18 binding sites of Magnesium where determined in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp, PDB code: 3j6e:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 18 in 3j6e

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Magnesium binding site 1 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:0.0
occ:1.00
 O A:HOH604 1.5 0.0 1.0
O A:HOH601 2.1 0.0 1.0
O A:HOH602 2.4 0.0 1.0
O1G A:GTP501 2.4 0.0 1.0
O A:HOH603 2.5 0.0 1.0
O1B A:GTP501 3.2 0.0 1.0
PG A:GTP501 3.7 0.0 1.0
O3B A:GTP501 3.7 0.0 1.0
OD2 A:ASP69 3.7 0.0 1.0
PB A:GTP501 3.8 0.0 1.0
CB A:GLN11 4.0 0.0 1.0
OD1 A:ASP69 4.1 0.0 1.0
OE1 A:GLN11 4.1 0.0 1.0
N A:GLN11 4.1 0.0 1.0
O3A A:GTP501 4.1 0.0 1.0
CG A:ASP69 4.3 0.0 1.0
O2A A:GTP501 4.4 0.0 1.0
O2G A:GTP501 4.5 0.0 1.0
CA A:GLN11 4.6 0.0 1.0
CG2 A:VAL74 4.7 0.0 1.0
OE1 A:GLU71 4.7 0.0 1.0
PA A:GTP501 4.8 0.0 1.0
O3G A:GTP501 4.9 0.0 1.0
CA A:GLY10 4.9 0.0 1.0
C A:GLY10 5.0 0.0 1.0

Magnesium binding site 2 out of 18 in 3j6e

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Magnesium binding site 2 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:0.0
occ:1.00
 O B:HOH603 1.6 0.0 1.0
O B:HOH602 2.1 0.0 1.0
O B:HOH604 2.4 0.0 1.0
O2B B:G2P501 2.4 0.0 1.0
O B:HOH601 2.5 0.0 1.0
O2G B:G2P501 2.5 0.0 1.0
PG B:G2P501 3.5 0.0 1.0
PB B:G2P501 3.7 0.0 1.0
O3B B:G2P501 3.8 0.0 1.0
OE2 B:GLU71 3.9 0.0 1.0
O1G B:G2P501 3.9 0.0 1.0
OD1 B:ASP69 4.0 0.0 1.0
C3A B:G2P501 4.2 0.0 1.0
CD B:GLU71 4.3 0.0 1.0
OD2 B:ASP69 4.3 0.0 1.0
CG B:GLU71 4.6 0.0 1.0
CG B:ASP69 4.6 0.0 1.0
O2A B:G2P501 4.6 0.0 1.0
CB B:GLU71 4.7 0.0 1.0
N B:GLN11 4.8 0.0 1.0
CB B:GLN11 4.8 0.0 1.0
OE1 B:GLU71 4.8 0.0 1.0
OE1 B:GLN11 4.9 0.0 1.0
OG1 B:THR74 4.9 0.0 1.0
O3G B:G2P501 4.9 0.0 1.0
PA B:G2P501 4.9 0.0 1.0

Magnesium binding site 3 out of 18 in 3j6e

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Magnesium binding site 3 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:0.0
occ:1.00
 O C:HOH604 1.5 0.0 1.0
O C:HOH601 2.1 0.0 1.0
O C:HOH602 2.4 0.0 1.0
O1G C:GTP501 2.4 0.0 1.0
O C:HOH603 2.5 0.0 1.0
O1B C:GTP501 3.2 0.0 1.0
PG C:GTP501 3.7 0.0 1.0
O3B C:GTP501 3.7 0.0 1.0
OD2 C:ASP69 3.7 0.0 1.0
PB C:GTP501 3.8 0.0 1.0
CB C:GLN11 4.0 0.0 1.0
OD1 C:ASP69 4.1 0.0 1.0
OE1 C:GLN11 4.1 0.0 1.0
N C:GLN11 4.1 0.0 1.0
O3A C:GTP501 4.1 0.0 1.0
CG C:ASP69 4.3 0.0 1.0
O2A C:GTP501 4.4 0.0 1.0
O2G C:GTP501 4.5 0.0 1.0
CA C:GLN11 4.6 0.0 1.0
CG2 C:VAL74 4.7 0.0 1.0
OE1 C:GLU71 4.7 0.0 1.0
PA C:GTP501 4.8 0.0 1.0
O3G C:GTP501 4.9 0.0 1.0
CA C:GLY10 4.9 0.0 1.0
C C:GLY10 5.0 0.0 1.0

Magnesium binding site 4 out of 18 in 3j6e

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Magnesium binding site 4 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:0.0
occ:1.00
 O D:HOH603 1.6 0.0 1.0
O D:HOH602 2.1 0.0 1.0
O D:HOH604 2.4 0.0 1.0
O2B D:G2P501 2.4 0.0 1.0
O D:HOH601 2.5 0.0 1.0
O2G D:G2P501 2.5 0.0 1.0
PG D:G2P501 3.5 0.0 1.0
PB D:G2P501 3.7 0.0 1.0
O3B D:G2P501 3.8 0.0 1.0
OE2 D:GLU71 3.9 0.0 1.0
O1G D:G2P501 3.9 0.0 1.0
OD1 D:ASP69 4.0 0.0 1.0
C3A D:G2P501 4.2 0.0 1.0
CD D:GLU71 4.2 0.0 1.0
OD2 D:ASP69 4.3 0.0 1.0
CG D:GLU71 4.6 0.0 1.0
CG D:ASP69 4.6 0.0 1.0
O2A D:G2P501 4.6 0.0 1.0
CB D:GLU71 4.7 0.0 1.0
N D:GLN11 4.8 0.0 1.0
CB D:GLN11 4.8 0.0 1.0
OE1 D:GLU71 4.8 0.0 1.0
OE1 D:GLN11 4.9 0.0 1.0
OG1 D:THR74 4.9 0.0 1.0
O3G D:G2P501 4.9 0.0 1.0
PA D:G2P501 4.9 0.0 1.0

Magnesium binding site 5 out of 18 in 3j6e

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Magnesium binding site 5 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:0.0
occ:1.00
 O E:HOH604 1.5 0.0 1.0
O E:HOH601 2.1 0.0 1.0
O E:HOH602 2.4 0.0 1.0
O1G E:GTP501 2.4 0.0 1.0
O E:HOH603 2.5 0.0 1.0
O1B E:GTP501 3.2 0.0 1.0
PG E:GTP501 3.7 0.0 1.0
O3B E:GTP501 3.7 0.0 1.0
OD2 E:ASP69 3.7 0.0 1.0
PB E:GTP501 3.8 0.0 1.0
CB E:GLN11 4.0 0.0 1.0
OD1 E:ASP69 4.1 0.0 1.0
OE1 E:GLN11 4.1 0.0 1.0
N E:GLN11 4.1 0.0 1.0
O3A E:GTP501 4.1 0.0 1.0
CG E:ASP69 4.3 0.0 1.0
O2A E:GTP501 4.4 0.0 1.0
O2G E:GTP501 4.5 0.0 1.0
CA E:GLN11 4.6 0.0 1.0
CG2 E:VAL74 4.7 0.0 1.0
OE1 E:GLU71 4.7 0.0 1.0
PA E:GTP501 4.8 0.0 1.0
O3G E:GTP501 4.9 0.0 1.0
CA E:GLY10 4.9 0.0 1.0
C E:GLY10 5.0 0.0 1.0

Magnesium binding site 6 out of 18 in 3j6e

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Magnesium binding site 6 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:0.0
occ:1.00
 O F:HOH603 1.6 0.0 1.0
O F:HOH602 2.1 0.0 1.0
O F:HOH604 2.4 0.0 1.0
O2B F:G2P501 2.4 0.0 1.0
O F:HOH601 2.5 0.0 1.0
O2G F:G2P501 2.5 0.0 1.0
PG F:G2P501 3.5 0.0 1.0
PB F:G2P501 3.7 0.0 1.0
O3B F:G2P501 3.8 0.0 1.0
OE2 F:GLU71 3.9 0.0 1.0
O1G F:G2P501 3.9 0.0 1.0
OD1 F:ASP69 4.0 0.0 1.0
C3A F:G2P501 4.2 0.0 1.0
CD F:GLU71 4.2 0.0 1.0
OD2 F:ASP69 4.3 0.0 1.0
CG F:GLU71 4.6 0.0 1.0
CG F:ASP69 4.6 0.0 1.0
O2A F:G2P501 4.6 0.0 1.0
CB F:GLU71 4.7 0.0 1.0
N F:GLN11 4.8 0.0 1.0
CB F:GLN11 4.8 0.0 1.0
OE1 F:GLU71 4.8 0.0 1.0
OE1 F:GLN11 4.9 0.0 1.0
OG1 F:THR74 4.9 0.0 1.0
O3G F:G2P501 4.9 0.0 1.0
PA F:G2P501 4.9 0.0 1.0

Magnesium binding site 7 out of 18 in 3j6e

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Magnesium binding site 7 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg502

b:0.0
occ:1.00
 O G:HOH604 1.5 0.0 1.0
O G:HOH601 2.1 0.0 1.0
O G:HOH602 2.4 0.0 1.0
O1G G:GTP501 2.4 0.0 1.0
O G:HOH603 2.5 0.0 1.0
O1B G:GTP501 3.2 0.0 1.0
PG G:GTP501 3.7 0.0 1.0
O3B G:GTP501 3.7 0.0 1.0
OD2 G:ASP69 3.7 0.0 1.0
PB G:GTP501 3.8 0.0 1.0
CB G:GLN11 4.0 0.0 1.0
OD1 G:ASP69 4.1 0.0 1.0
OE1 G:GLN11 4.1 0.0 1.0
N G:GLN11 4.1 0.0 1.0
O3A G:GTP501 4.1 0.0 1.0
CG G:ASP69 4.3 0.0 1.0
O2A G:GTP501 4.4 0.0 1.0
O2G G:GTP501 4.5 0.0 1.0
CA G:GLN11 4.6 0.0 1.0
CG2 G:VAL74 4.7 0.0 1.0
OE1 G:GLU71 4.7 0.0 1.0
PA G:GTP501 4.8 0.0 1.0
O3G G:GTP501 4.9 0.0 1.0
CA G:GLY10 4.9 0.0 1.0
C G:GLY10 5.0 0.0 1.0

Magnesium binding site 8 out of 18 in 3j6e

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Magnesium binding site 8 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg502

b:0.0
occ:1.00
 O H:HOH903 1.6 0.0 1.0
O H:HOH902 2.1 0.0 1.0
O H:HOH904 2.4 0.0 1.0
O2B H:G2P501 2.4 0.0 1.0
O H:HOH901 2.5 0.0 1.0
O2G H:G2P501 2.5 0.0 1.0
PG H:G2P501 3.5 0.0 1.0
PB H:G2P501 3.7 0.0 1.0
O3B H:G2P501 3.8 0.0 1.0
OE2 H:GLU71 3.9 0.0 1.0
O1G H:G2P501 3.9 0.0 1.0
OD1 H:ASP69 4.0 0.0 1.0
C3A H:G2P501 4.2 0.0 1.0
CD H:GLU71 4.2 0.0 1.0
OD2 H:ASP69 4.3 0.0 1.0
CG H:GLU71 4.6 0.0 1.0
CG H:ASP69 4.6 0.0 1.0
O2A H:G2P501 4.6 0.0 1.0
CB H:GLU71 4.7 0.0 1.0
N H:GLN11 4.8 0.0 1.0
CB H:GLN11 4.8 0.0 1.0
OE1 H:GLU71 4.8 0.0 1.0
OE1 H:GLN11 4.9 0.0 1.0
OG1 H:THR74 4.9 0.0 1.0
O3G H:G2P501 4.9 0.0 1.0
PA H:G2P501 4.9 0.0 1.0

Magnesium binding site 9 out of 18 in 3j6e

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Magnesium binding site 9 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg502

b:0.0
occ:1.00
 O I:HOH604 1.5 0.0 1.0
O I:HOH601 2.1 0.0 1.0
O I:HOH602 2.4 0.0 1.0
O1G I:GTP501 2.4 0.0 1.0
O I:HOH603 2.5 0.0 1.0
O1B I:GTP501 3.2 0.0 1.0
PG I:GTP501 3.7 0.0 1.0
O3B I:GTP501 3.7 0.0 1.0
OD2 I:ASP69 3.7 0.0 1.0
PB I:GTP501 3.8 0.0 1.0
CB I:GLN11 4.0 0.0 1.0
OD1 I:ASP69 4.1 0.0 1.0
OE1 I:GLN11 4.1 0.0 1.0
N I:GLN11 4.1 0.0 1.0
O3A I:GTP501 4.1 0.0 1.0
CG I:ASP69 4.3 0.0 1.0
O2A I:GTP501 4.4 0.0 1.0
O2G I:GTP501 4.5 0.0 1.0
CA I:GLN11 4.6 0.0 1.0
CG2 I:VAL74 4.7 0.0 1.0
OE1 I:GLU71 4.7 0.0 1.0
PA I:GTP501 4.8 0.0 1.0
O3G I:GTP501 4.9 0.0 1.0
CA I:GLY10 4.9 0.0 1.0
C I:GLY10 5.0 0.0 1.0

Magnesium binding site 10 out of 18 in 3j6e

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Magnesium binding site 10 out of 18 in the Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Energy Minimized Average Structure of Microtubules Stabilized By Gmpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg502

b:0.0
occ:1.00
 O J:HOH603 1.6 0.0 1.0
O J:HOH602 2.1 0.0 1.0
O J:HOH604 2.4 0.0 1.0
O2B J:G2P501 2.4 0.0 1.0
O J:HOH601 2.5 0.0 1.0
O2G J:G2P501 2.5 0.0 1.0
PG J:G2P501 3.5 0.0 1.0
PB J:G2P501 3.7 0.0 1.0
O3B J:G2P501 3.8 0.0 1.0
OE2 J:GLU71 3.9 0.0 1.0
O1G J:G2P501 3.9 0.0 1.0
OD1 J:ASP69 4.0 0.0 1.0
C3A J:G2P501 4.2 0.0 1.0
CD J:GLU71 4.2 0.0 1.0
OD2 J:ASP69 4.3 0.0 1.0
CG J:GLU71 4.6 0.0 1.0
CG J:ASP69 4.6 0.0 1.0
O2A J:G2P501 4.6 0.0 1.0
CB J:GLU71 4.7 0.0 1.0
N J:GLN11 4.8 0.0 1.0
CB J:GLN11 4.8 0.0 1.0
OE1 J:GLU71 4.8 0.0 1.0
OE1 J:GLN11 4.9 0.0 1.0
OG1 J:THR74 4.9 0.0 1.0
O3G J:G2P501 4.9 0.0 1.0
PA J:G2P501 4.9 0.0 1.0

Reference:

G.M.Alushin, G.C.Lander, E.H.Kellogg, R.Zhang, D.Baker, E.Nogales. High-Resolution Microtubule Structures Reveal the Structural Transitions in Alpha Beta-Tubulin Upon Gtp Hydrolysis. Cell(Cambridge,Mass.) V. 157 1117 2014.
ISSN: ISSN 0092-8674
PubMed: 24855948
DOI: 10.1016/J.CELL.2014.03.053
Page generated: Wed Aug 14 16:22:20 2024

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