Magnesium in PDB 3j6g: Minimized Average Structure of Microtubules Stabilized By Taxol

The binding sites of Magnesium atom in the Minimized Average Structure of Microtubules Stabilized By Taxol (pdb code 3j6g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Minimized Average Structure of Microtubules Stabilized By Taxol, PDB code: 3j6g:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Magnesium binding site 1 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:0.0 occ:1.00 O A:HOH601 2.1 0.0 1.0 O A:HOH604 2.3 0.0 1.0 O A:HOH602 2.3 0.0 1.0 O A:HOH603 2.4 0.0 1.0 O1G A:GTP501 2.4 0.0 1.0 O1B A:GTP501 3.2 0.0 1.0 PG A:GTP501 3.7 0.0 1.0 O3B A:GTP501 3.7 0.0 1.0 NZ B:LYS254 3.8 0.0 1.0 PB A:GTP501 3.8 0.0 1.0 CB A:GLN11 4.0 0.0 1.0 O3A A:GTP501 4.1 0.0 1.0 OE1 A:GLN11 4.2 0.0 1.0 N A:GLN11 4.3 0.0 1.0 O2A A:GTP501 4.4 0.0 1.0 OE2 A:GLU71 4.4 0.0 1.0 O2G A:GTP501 4.5 0.0 1.0 OD2 A:ASP69 4.5 0.0 1.0 OD1 A:ASP69 4.7 0.0 1.0 CA A:GLN11 4.7 0.0 1.0 PA A:GTP501 4.8 0.0 1.0 O3G A:GTP501 4.9 0.0 1.0

Magnesium binding site 2 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:0.0 occ:1.00 O C:HOH601 2.1 0.0 1.0 O C:HOH604 2.3 0.0 1.0 O C:HOH602 2.3 0.0 1.0 O C:HOH603 2.4 0.0 1.0 O1G C:GTP501 2.4 0.0 1.0 O1B C:GTP501 3.2 0.0 1.0 PG C:GTP501 3.7 0.0 1.0 O3B C:GTP501 3.7 0.0 1.0 NZ D:LYS254 3.8 0.0 1.0 PB C:GTP501 3.8 0.0 1.0 CB C:GLN11 4.0 0.0 1.0 O3A C:GTP501 4.1 0.0 1.0 OE1 C:GLN11 4.2 0.0 1.0 N C:GLN11 4.3 0.0 1.0 O2A C:GTP501 4.4 0.0 1.0 OE2 C:GLU71 4.4 0.0 1.0 O2G C:GTP501 4.5 0.0 1.0 OD2 C:ASP69 4.5 0.0 1.0 OD1 C:ASP69 4.7 0.0 1.0 CA C:GLN11 4.7 0.0 1.0 PA C:GTP501 4.8 0.0 1.0 O3G C:GTP501 4.9 0.0 1.0

Magnesium binding site 3 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:0.0 occ:1.00 O E:HOH601 2.1 0.0 1.0 O E:HOH604 2.3 0.0 1.0 O E:HOH602 2.3 0.0 1.0 O E:HOH603 2.4 0.0 1.0 O1G E:GTP501 2.4 0.0 1.0 O1B E:GTP501 3.2 0.0 1.0 PG E:GTP501 3.7 0.0 1.0 O3B E:GTP501 3.7 0.0 1.0 NZ F:LYS254 3.8 0.0 1.0 PB E:GTP501 3.8 0.0 1.0 CB E:GLN11 4.0 0.0 1.0 O3A E:GTP501 4.1 0.0 1.0 OE1 E:GLN11 4.2 0.0 1.0 N E:GLN11 4.3 0.0 1.0 O2A E:GTP501 4.4 0.0 1.0 OE2 E:GLU71 4.4 0.0 1.0 O2G E:GTP501 4.5 0.0 1.0 OD2 E:ASP69 4.5 0.0 1.0 OD1 E:ASP69 4.7 0.0 1.0 CA E:GLN11 4.7 0.0 1.0 PA E:GTP501 4.8 0.0 1.0 O3G E:GTP501 4.9 0.0 1.0

Magnesium binding site 4 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:0.0 occ:1.00 O G:HOH601 2.1 0.0 1.0 O G:HOH604 2.3 0.0 1.0 O G:HOH602 2.3 0.0 1.0 O G:HOH603 2.4 0.0 1.0 O1G G:GTP501 2.4 0.0 1.0 O1B G:GTP501 3.2 0.0 1.0 PG G:GTP501 3.7 0.0 1.0 O3B G:GTP501 3.7 0.0 1.0 NZ H:LYS254 3.8 0.0 1.0 PB G:GTP501 3.8 0.0 1.0 CB G:GLN11 4.0 0.0 1.0 O3A G:GTP501 4.1 0.0 1.0 OE1 G:GLN11 4.2 0.0 1.0 N G:GLN11 4.3 0.0 1.0 O2A G:GTP501 4.4 0.0 1.0 OE2 G:GLU71 4.4 0.0 1.0 O2G G:GTP501 4.5 0.0 1.0 OD2 G:ASP69 4.5 0.0 1.0 OD1 G:ASP69 4.7 0.0 1.0 CA G:GLN11 4.7 0.0 1.0 PA G:GTP501 4.8 0.0 1.0 O3G G:GTP501 4.9 0.0 1.0

Magnesium binding site 5 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg502 b:0.0 occ:1.00 O I:HOH601 2.1 0.0 1.0 O I:HOH604 2.3 0.0 1.0 O I:HOH602 2.3 0.0 1.0 O I:HOH603 2.4 0.0 1.0 O1G I:GTP501 2.4 0.0 1.0 O1B I:GTP501 3.2 0.0 1.0 PG I:GTP501 3.7 0.0 1.0 O3B I:GTP501 3.7 0.0 1.0 NZ J:LYS254 3.8 0.0 1.0 PB I:GTP501 3.8 0.0 1.0 CB I:GLN11 4.0 0.0 1.0 O3A I:GTP501 4.1 0.0 1.0 OE1 I:GLN11 4.2 0.0 1.0 N I:GLN11 4.3 0.0 1.0 O2A I:GTP501 4.4 0.0 1.0 OE2 I:GLU71 4.4 0.0 1.0 O2G I:GTP501 4.5 0.0 1.0 OD2 I:ASP69 4.5 0.0 1.0 OD1 I:ASP69 4.7 0.0 1.0 CA I:GLN11 4.7 0.0 1.0 PA I:GTP501 4.8 0.0 1.0 O3G I:GTP501 4.9 0.0 1.0

Magnesium binding site 6 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg502 b:0.0 occ:1.00 O K:HOH601 2.1 0.0 1.0 O K:HOH604 2.3 0.0 1.0 O K:HOH602 2.3 0.0 1.0 O K:HOH603 2.4 0.0 1.0 O1G K:GTP501 2.4 0.0 1.0 O1B K:GTP501 3.2 0.0 1.0 PG K:GTP501 3.7 0.0 1.0 O3B K:GTP501 3.7 0.0 1.0 NZ L:LYS254 3.8 0.0 1.0 PB K:GTP501 3.8 0.0 1.0 CB K:GLN11 4.0 0.0 1.0 O3A K:GTP501 4.1 0.0 1.0 OE1 K:GLN11 4.2 0.0 1.0 N K:GLN11 4.3 0.0 1.0 O2A K:GTP501 4.4 0.0 1.0 OE2 K:GLU71 4.4 0.0 1.0 O2G K:GTP501 4.5 0.0 1.0 OD2 K:ASP69 4.5 0.0 1.0 OD1 K:ASP69 4.7 0.0 1.0 CA K:GLN11 4.7 0.0 1.0 PA K:GTP501 4.8 0.0 1.0 O3G K:GTP501 4.9 0.0 1.0

Magnesium binding site 7 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg502 b:0.0 occ:1.00 O M:HOH601 2.1 0.0 1.0 O M:HOH604 2.3 0.0 1.0 O M:HOH602 2.3 0.0 1.0 O M:HOH603 2.4 0.0 1.0 O1G M:GTP501 2.4 0.0 1.0 O1B M:GTP501 3.2 0.0 1.0 PG M:GTP501 3.7 0.0 1.0 O3B M:GTP501 3.7 0.0 1.0 NZ N:LYS254 3.8 0.0 1.0 PB M:GTP501 3.8 0.0 1.0 CB M:GLN11 4.0 0.0 1.0 O3A M:GTP501 4.1 0.0 1.0 OE1 M:GLN11 4.2 0.0 1.0 N M:GLN11 4.3 0.0 1.0 O2A M:GTP501 4.4 0.0 1.0 OE2 M:GLU71 4.4 0.0 1.0 O2G M:GTP501 4.5 0.0 1.0 OD2 M:ASP69 4.5 0.0 1.0 OD1 M:ASP69 4.7 0.0 1.0 CA M:GLN11 4.7 0.0 1.0 PA M:GTP501 4.8 0.0 1.0 O3G M:GTP501 4.9 0.0 1.0

Magnesium binding site 8 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg502 b:0.0 occ:1.00 O O:HOH601 2.1 0.0 1.0 O O:HOH604 2.3 0.0 1.0 O O:HOH602 2.3 0.0 1.0 O O:HOH603 2.4 0.0 1.0 O1G O:GTP501 2.4 0.0 1.0 O1B O:GTP501 3.2 0.0 1.0 PG O:GTP501 3.7 0.0 1.0 O3B O:GTP501 3.7 0.0 1.0 NZ P:LYS254 3.8 0.0 1.0 PB O:GTP501 3.8 0.0 1.0 CB O:GLN11 4.0 0.0 1.0 O3A O:GTP501 4.1 0.0 1.0 OE1 O:GLN11 4.2 0.0 1.0 N O:GLN11 4.3 0.0 1.0 O2A O:GTP501 4.4 0.0 1.0 OE2 O:GLU71 4.4 0.0 1.0 O2G O:GTP501 4.5 0.0 1.0 OD2 O:ASP69 4.5 0.0 1.0 OD1 O:ASP69 4.7 0.0 1.0 CA O:GLN11 4.7 0.0 1.0 PA O:GTP501 4.8 0.0 1.0 O3G O:GTP501 4.9 0.0 1.0

Magnesium binding site 9 out of 9 in the Minimized Average Structure of Microtubules Stabilized By Taxol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Minimized Average Structure of Microtubules Stabilized By Taxol within 5.0Å range: probe atom residue distance (Å) B Occ Q:Mg502 b:0.0 occ:1.00 O Q:HOH601 2.1 0.0 1.0 O Q:HOH604 2.3 0.0 1.0 O Q:HOH602 2.3 0.0 1.0 O Q:HOH603 2.4 0.0 1.0 O1G Q:GTP501 2.4 0.0 1.0 O1B Q:GTP501 3.2 0.0 1.0 PG Q:GTP501 3.7 0.0 1.0 O3B Q:GTP501 3.7 0.0 1.0 NZ R:LYS254 3.8 0.0 1.0 PB Q:GTP501 3.8 0.0 1.0 CB Q:GLN11 4.0 0.0 1.0 O3A Q:GTP501 4.1 0.0 1.0 OE1 Q:GLN11 4.2 0.0 1.0 N Q:GLN11 4.3 0.0 1.0 O2A Q:GTP501 4.4 0.0 1.0 OE2 Q:GLU71 4.4 0.0 1.0 O2G Q:GTP501 4.5 0.0 1.0 OD2 Q:ASP69 4.5 0.0 1.0 OD1 Q:ASP69 4.7 0.0 1.0 CA Q:GLN11 4.7 0.0 1.0 PA Q:GTP501 4.8 0.0 1.0 O3G Q:GTP501 4.9 0.0 1.0

G.M.Alushin, G.C.Lander, E.H.Kellogg, R.Zhang, D.Baker, E.Nogales. High-Resolution Microtubule Structures Reveal the Structural Transitions in Alpha Beta-Tubulin Upon Gtp Hydrolysis. Cell(Cambridge,Mass.) V. 157 1117 2014.
ISSN: ISSN 0092-8674
PubMed: 24855948
DOI: 10.1016/J.CELL.2014.03.053