Magnesium in PDB 3j6h: Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule

The binding sites of Magnesium atom in the Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule (pdb code 3j6h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule, PDB code: 3j6h:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:20.0 occ:1.00 O1G A:GTP502 2.2 20.0 1.0 O1B A:GTP502 2.6 20.0 1.0 OE1 A:GLN11 3.3 20.0 1.0 PG A:GTP502 3.6 20.0 1.0 PB A:GTP502 3.8 20.0 1.0 O2A A:GTP502 3.9 20.0 1.0 O B:GLN247 4.0 20.0 1.0 O3B A:GTP502 4.0 20.0 1.0 O2G A:GTP502 4.2 20.0 1.0 O3A A:GTP502 4.3 20.0 1.0 CD A:GLN11 4.4 20.0 1.0 CB A:GLN11 4.6 20.0 1.0 PA A:GTP502 4.7 20.0 1.0 O3G A:GTP502 4.8 20.0 1.0 CG A:GLN11 4.8 20.0 1.0 N A:ALA12 4.9 20.0 1.0 NE2 A:GLN15 4.9 20.0 1.0

Magnesium binding site 2 out of 2 in the Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nucleotide-Free Kinesin Motor Domain Complexed with Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:20.0 occ:1.00 O1B B:G2P602 2.1 20.0 1.0 O1G B:G2P602 2.1 20.0 1.0 OE1 B:GLU71 2.3 20.0 1.0 CB B:GLN11 2.7 20.0 1.0 OG1 B:THR74 3.0 20.0 1.0 CD B:GLU71 3.0 20.0 1.0 PG B:G2P602 3.1 20.0 1.0 PB B:G2P602 3.3 20.0 1.0 O3B B:G2P602 3.4 20.0 1.0 O2G B:G2P602 3.4 20.0 1.0 OE2 B:GLU71 3.5 20.0 1.0 CG B:GLN11 3.5 20.0 1.0 CB B:GLU71 3.7 20.0 1.0 CD B:GLN11 3.7 20.0 1.0 CA B:GLN11 3.7 20.0 1.0 OD1 B:ASP69 3.8 20.0 1.0 OD2 B:ASP69 3.8 20.0 1.0 CG B:GLU71 3.9 20.0 1.0 C3A B:G2P602 3.9 20.0 1.0 N B:GLN11 4.0 20.0 1.0 OE1 B:GLN11 4.0 20.0 1.0 CB B:THR74 4.1 20.0 1.0 CG B:ASP69 4.2 20.0 1.0 NE2 B:GLN11 4.3 20.0 1.0 O1A B:G2P602 4.4 20.0 1.0 CG2 B:THR74 4.5 20.0 1.0 O3G B:G2P602 4.5 20.0 1.0 O2B B:G2P602 4.6 20.0 1.0 PA B:G2P602 4.6 20.0 1.0 OG1 B:THR145 4.7 20.0 1.0

M.Morikawa, H.Yajima, R.Nitta, S.Inoue, T.Ogura, C.Sato, N.Hirokawa. X-Ray and Cryo-Em Structures Reveal Mutual Conformational Changes of Kinesin and Gtp-State Microtubules Upon Binding Embo J. 2015.
ISSN: ESSN 1460-2075
PubMed: 25777528
DOI: 10.15252/EMBJ.201490588