Magnesium in PDB 3j8i: Near-Atomic Resolution For One State of F-Actin

The binding sites of Magnesium atom in the Near-Atomic Resolution For One State of F-Actin (pdb code 3j8i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Near-Atomic Resolution For One State of F-Actin, PDB code: 3j8i:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Near-Atomic Resolution For One State of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Near-Atomic Resolution For One State of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:1.0 occ:1.00 O1B D:ADP401 3.0 98.2 1.0 O3B D:ADP401 3.1 87.4 1.0 O1A D:ADP401 3.2 0.6 1.0 OD2 D:ASP154 3.5 73.3 1.0 PB D:ADP401 3.6 95.8 1.0 CG1 D:VAL339 3.7 0.9 1.0 OE1 D:GLN137 3.8 87.3 1.0 PA D:ADP401 4.3 0.8 1.0 O3A D:ADP401 4.3 83.3 1.0 O D:ASP154 4.4 98.9 1.0 CG D:ASP154 4.6 73.3 1.0 CA D:GLY13 4.6 98.2 1.0 CB D:VAL339 4.7 0.9 1.0 CG2 D:VAL339 4.7 0.9 1.0 OD1 D:ASP11 4.8 0.7 1.0 CD D:GLN137 4.9 87.3 1.0 O2A D:ADP401 4.9 0.5 1.0 CB D:ASP154 5.0 73.3 1.0

Magnesium binding site 2 out of 5 in the Near-Atomic Resolution For One State of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Near-Atomic Resolution For One State of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:1.0 occ:1.00 O1B E:ADP401 3.0 98.2 1.0 O3B E:ADP401 3.1 85.9 1.0 O1A E:ADP401 3.2 0.1 1.0 OD2 E:ASP154 3.5 73.6 1.0 PB E:ADP401 3.6 92.8 1.0 CG1 E:VAL339 3.7 0.8 1.0 OE1 E:GLN137 3.9 87.8 1.0 PA E:ADP401 4.3 0.2 1.0 O3A E:ADP401 4.3 82.4 1.0 O E:ASP154 4.4 99.0 1.0 CG E:ASP154 4.6 73.6 1.0 CB E:VAL339 4.7 0.8 1.0 CG2 E:VAL339 4.7 0.8 1.0 CA E:GLY13 4.7 98.6 1.0 O2A E:ADP401 4.9 0.2 1.0 OD1 E:ASP11 4.9 0.7 1.0 CD E:GLN137 4.9 87.8 1.0 CB E:ASP154 4.9 73.6 1.0

Magnesium binding site 3 out of 5 in the Near-Atomic Resolution For One State of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Near-Atomic Resolution For One State of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:1.0 occ:1.00 O1B F:ADP401 2.9 97.9 1.0 O3B F:ADP401 3.1 86.5 1.0 O1A F:ADP401 3.2 0.0 1.0 OD2 F:ASP154 3.5 73.8 1.0 PB F:ADP401 3.6 94.7 1.0 CG1 F:VAL339 3.7 0.9 1.0 OE1 F:GLN137 3.8 87.7 1.0 PA F:ADP401 4.3 0.1 1.0 O3A F:ADP401 4.3 82.5 1.0 O F:ASP154 4.4 99.5 1.0 CG F:ASP154 4.6 73.8 1.0 CA F:GLY13 4.6 98.4 1.0 CB F:VAL339 4.7 0.9 1.0 CG2 F:VAL339 4.7 0.9 1.0 OD1 F:ASP11 4.8 0.4 1.0 CD F:GLN137 4.9 87.7 1.0 O2A F:ADP401 4.9 0.9 1.0 O2B F:ADP401 5.0 89.6 1.0 CB F:ASP154 5.0 73.8 1.0

Magnesium binding site 4 out of 5 in the Near-Atomic Resolution For One State of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Near-Atomic Resolution For One State of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:1.0 occ:1.00 O1B G:ADP401 3.0 98.0 1.0 O3B G:ADP401 3.1 85.7 1.0 O1A G:ADP401 3.2 0.7 1.0 OD2 G:ASP154 3.5 73.4 1.0 PB G:ADP401 3.6 94.7 1.0 CG1 G:VAL339 3.7 0.9 1.0 OE1 G:GLN137 3.8 87.5 1.0 O3A G:ADP401 4.3 83.7 1.0 PA G:ADP401 4.3 0.7 1.0 O G:ASP154 4.4 99.0 1.0 CG G:ASP154 4.5 73.4 1.0 CA G:GLY13 4.6 98.8 1.0 CB G:VAL339 4.7 0.9 1.0 CG2 G:VAL339 4.7 0.9 1.0 OD1 G:ASP11 4.8 0.8 1.0 CD G:GLN137 4.9 87.5 1.0 O2A G:ADP401 4.9 0.0 1.0 CB G:ASP154 5.0 73.4 1.0

Magnesium binding site 5 out of 5 in the Near-Atomic Resolution For One State of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Near-Atomic Resolution For One State of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg402 b:1.0 occ:1.00 O1B H:ADP401 3.0 98.2 1.0 O3B H:ADP401 3.1 86.4 1.0 O1A H:ADP401 3.3 1.0 1.0 OD2 H:ASP154 3.5 74.2 1.0 PB H:ADP401 3.6 96.3 1.0 CG1 H:VAL339 3.7 0.5 1.0 OE1 H:GLN137 3.8 87.5 1.0 O3A H:ADP401 4.4 83.2 1.0 PA H:ADP401 4.4 0.3 1.0 O H:ASP154 4.4 99.1 1.0 CG H:ASP154 4.5 74.2 1.0 CA H:GLY13 4.7 97.9 1.0 CB H:VAL339 4.7 0.5 1.0 CG2 H:VAL339 4.7 0.5 1.0 OD1 H:ASP11 4.9 1.0 1.0 CD H:GLN137 4.9 87.5 1.0 O2A H:ADP401 5.0 0.3 1.0 CB H:ASP154 5.0 74.2 1.0

V.E.Galkin, A.Orlova, M.R.Vos, G.F.Schroder, E.H.Egelman. Near-Atomic Resolution For One State of F-Actin. Structure V. 23 173 2015.
ISSN: ISSN 0969-2126
PubMed: 25533486
DOI: 10.1016/J.STR.2014.11.006