Magnesium in PDB 3jaw: Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp)

The binding sites of Magnesium atom in the Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp) (pdb code 3jaw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp), PDB code: 3jaw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:26.0 occ:1.00 O1B A:GTP501 1.9 26.4 1.0 O1G A:GTP501 2.0 27.9 1.0 OE2 A:GLU71 2.6 74.5 1.0 PB A:GTP501 3.0 26.6 1.0 PG A:GTP501 3.1 28.1 1.0 O3B A:GTP501 3.5 27.2 1.0 O2G A:GTP501 3.6 28.2 1.0 NZ B:LYS254 3.6 80.0 1.0 O3A A:GTP501 3.6 25.1 1.0 OE1 A:GLN11 3.8 41.7 1.0 CD A:GLU71 3.9 74.9 1.0 OD2 A:ASP69 4.1 46.3 1.0 CB A:GLN11 4.1 38.8 1.0 O1A A:GTP501 4.3 24.1 1.0 O2B A:GTP501 4.3 27.0 1.0 OD1 A:ASP69 4.4 45.8 1.0 O3G A:GTP501 4.4 28.3 1.0 N A:GLN11 4.5 37.2 1.0 PA A:GTP501 4.5 23.9 1.0 OE1 A:GLU71 4.6 75.9 1.0 CG A:ASP69 4.7 45.4 1.0 CD A:GLN11 4.7 41.3 1.0 CG A:GLU71 4.9 72.1 1.0 CB A:ASP98 4.9 82.0 1.0 CA A:GLN11 4.9 38.2 1.0

Magnesium binding site 2 out of 2 in the Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Model of A Microtubule Seam Based on A Cryo-Em Reconstruction of the EB3-Bound Microtubule (Merged Dataset Containing Tubulin Bound to Gtpgammas, Gmpcpp, and Gdp) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:25.9 occ:1.00 O1B C:GTP501 2.1 33.4 1.0 O1G C:GTP501 2.4 34.8 1.0 PB C:GTP501 3.3 33.4 1.0 PG C:GTP501 3.5 35.1 1.0 OE2 C:GLU71 3.6 89.1 1.0 O3B C:GTP501 3.8 33.9 1.0 O3A C:GTP501 3.9 33.7 1.0 O2G C:GTP501 3.9 35.1 1.0 OD2 C:ASP69 4.1 53.3 1.0 CB C:GLN11 4.2 59.4 1.0 O1A C:GTP501 4.4 34.2 1.0 N C:GLN11 4.5 55.3 1.0 OD1 C:ASP69 4.6 53.8 1.0 O2B C:GTP501 4.6 33.1 1.0 OE1 C:GLN11 4.6 66.2 1.0 CD C:GLU71 4.7 87.1 1.0 PA C:GTP501 4.7 34.4 1.0 CG C:ASP69 4.8 53.2 1.0 O3G C:GTP501 4.8 35.9 1.0 CA C:GLN11 4.9 57.2 1.0 CB C:ASP98 5.0 84.7 1.0 CG C:GLU71 5.0 80.8 1.0

R.Zhang, G.M.Alushin, A.Brown, E.Nogales. Mechanistic Origin of Microtubule Dynamic Instability and Its Modulation By Eb Proteins. Cell(Cambridge,Mass.) V. 162 849 2015.
ISSN: ISSN 0092-8674
PubMed: 26234155
DOI: 10.1016/J.CELL.2015.07.012