Magnesium in PDB 3jbj: Cryo-Em Reconstruction of F-Actin

The binding sites of Magnesium atom in the Cryo-Em Reconstruction of F-Actin (pdb code 3jbj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Reconstruction of F-Actin, PDB code: 3jbj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Reconstruction of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Reconstruction of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:0.0 occ:1.00 O1B A:ADP402 1.7 0.0 1.0 OE1 A:GLN137 1.9 0.0 1.0 OD1 A:ASP154 1.9 0.0 1.0 OD2 A:ASP154 1.9 0.0 1.0 CG A:ASP154 2.2 0.0 1.0 PB A:ADP402 3.0 0.0 1.0 CD A:GLN137 3.0 0.0 1.0 O2B A:ADP402 3.3 0.0 1.0 NE2 A:GLN137 3.7 0.0 1.0 CB A:ASP154 3.7 0.0 1.0 O3B A:ADP402 3.8 0.0 1.0 C A:ASP154 4.1 0.0 1.0 O3A A:ADP402 4.1 0.0 1.0 CB A:GLN137 4.1 0.0 1.0 CG A:GLN137 4.2 0.0 1.0 OG A:SER14 4.2 0.0 1.0 CA A:ASP154 4.3 0.0 1.0 N A:SER155 4.3 0.0 1.0 O A:ASP154 4.3 0.0 1.0 N A:GLY156 4.4 0.0 1.0 C A:SER155 4.7 0.0 1.0 CA A:GLY156 5.0 0.0 1.0 CA A:SER155 5.0 0.0 1.0 O A:VAL159 5.0 0.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Reconstruction of F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Reconstruction of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:0.0 occ:1.00 O3B B:ADP402 1.8 0.0 1.0 O1B B:ADP402 1.8 0.0 1.0 OD2 B:ASP154 1.8 0.0 1.0 OD1 B:ASP154 1.9 0.0 1.0 OE1 B:GLN137 1.9 0.0 1.0 CG B:ASP154 2.2 0.0 1.0 PB B:ADP402 2.4 0.0 1.0 CD B:GLN137 2.9 0.0 1.0 O2B B:ADP402 3.3 0.0 1.0 NE2 B:GLN137 3.5 0.0 1.0 O3A B:ADP402 3.6 0.0 1.0 CB B:ASP154 3.7 0.0 1.0 OG B:SER14 4.0 0.0 1.0 CG B:GLN137 4.1 0.0 1.0 C B:ASP154 4.4 0.0 1.0 CA B:ASP154 4.4 0.0 1.0 N B:SER155 4.5 0.0 1.0 CB B:GLN137 4.6 0.0 1.0 O1A B:ADP402 4.7 0.0 1.0 PA B:ADP402 4.7 0.0 1.0 N B:GLY156 4.7 0.0 1.0 CG2 B:VAL339 4.7 0.0 1.0 O B:ASP154 4.8 0.0 1.0 N B:SER14 4.8 0.0 1.0 C B:SER155 4.8 0.0 1.0 CB B:SER14 4.9 0.0 1.0

L.Y.Kim, P.M.Thompson, H.T.Lee, M.Pershad, S.L.Campbell, G.M.Alushin. The Structural Basis of Actin Organization By Vinculin and Metavinculin. J.Mol.Biol. V. 428 10 2016.
ISSN: ISSN 0022-2836
PubMed: 26493222
DOI: 10.1016/J.JMB.2015.09.031