Magnesium in PDB 3jbz: Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase

All present enzymatic activity of Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase:
2.7.11.1;

The structure of Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase (pdb code 3jbz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase, PDB code: 3jbz:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2602 b:74.5 occ:1.00 O1A A:ADP2601 2.0 79.6 1.0 F1 A:MGF2604 2.2 75.1 1.0 OD1 A:ASN2343 2.4 68.2 1.0 O3B A:ADP2601 2.5 78.5 1.0 PA A:ADP2601 3.3 81.1 1.0 PB A:ADP2601 3.3 81.9 1.0 O2B A:ADP2601 3.3 81.5 1.0 OD2 A:ASP2357 3.3 69.3 1.0 MG A:MGF2604 3.3 78.7 1.0 O A:SER2342 3.5 49.4 1.0 O3A A:ADP2601 3.6 82.5 1.0 CG A:ASN2343 3.6 60.7 1.0 O2A A:ADP2601 4.1 79.0 1.0 C A:SER2342 4.1 49.9 1.0 CG A:ASP2357 4.1 65.8 1.0 F3 A:MGF2604 4.3 76.8 1.0 CD1 A:ILE2356 4.3 51.7 1.0 CB A:ASP2357 4.3 61.8 1.0 CE1 A:HIS2340 4.4 54.1 1.0 ND2 A:ASN2343 4.4 61.2 1.0 F2 A:MGF2604 4.5 79.3 1.0 NE2 A:HIS2340 4.5 53.6 1.0 CB A:SER2342 4.5 49.0 1.0 O5' A:ADP2601 4.5 76.6 1.0 CA A:ASN2343 4.5 52.5 1.0 N A:ASN2343 4.6 51.4 1.0 CB A:ASN2343 4.7 56.2 1.0 O1B A:ADP2601 4.7 78.6 1.0 C5' A:ADP2601 4.7 73.0 1.0 O3' A:ADP2601 4.8 70.7 1.0 C3' A:ADP2601 4.9 70.6 1.0 CA A:SER2342 5.0 49.3 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2603 b:72.6 occ:1.00 F3 A:MGF2604 1.9 76.8 1.0 OD1 A:ASP2357 2.1 69.0 1.0 CG A:ASP2357 2.8 65.8 1.0 OD2 A:ASP2357 3.0 69.3 1.0 MG A:MGF2604 3.6 78.7 1.0 OD2 A:ASP2338 3.7 52.3 1.0 O3B A:ADP2601 3.8 78.5 1.0 CB A:ASP2357 4.3 61.8 1.0 ND2 A:ASN2343 4.4 61.2 1.0 F2 A:MGF2604 4.5 79.3 1.0 CA A:GLY2359 4.9 57.4 1.0 N A:GLY2359 4.9 55.3 1.0 F1 A:MGF2604 4.9 75.1 1.0 CG A:ASP2338 4.9 52.4 1.0 O A:ASP2357 4.9 54.8 1.0 O1B A:ADP2601 4.9 78.6 1.0 PB A:ADP2601 5.0 81.9 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Mtor Docked Into Em Map of Dimeric Atm Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2604 b:78.7 occ:1.00 MG A:MGF2604 0.0 78.7 1.0 F1 A:MGF2604 1.8 75.1 1.0 F2 A:MGF2604 1.8 79.3 1.0 F3 A:MGF2604 1.8 76.8 1.0 O3B A:ADP2601 2.6 78.5 1.0 MG A:MG2602 3.3 74.5 1.0 PB A:ADP2601 3.5 81.9 1.0 MG A:MG2603 3.6 72.6 1.0 OD2 A:ASP2357 3.6 69.3 1.0 O2B A:ADP2601 3.7 81.5 1.0 NE2 A:HIS2340 3.7 53.6 1.0 OD1 A:ASN2343 4.0 68.2 1.0 O1B A:ADP2601 4.1 78.6 1.0 CE1 A:HIS2340 4.2 54.1 1.0 CG A:ASP2357 4.3 65.8 1.0 ND2 A:ASN2343 4.5 61.2 1.0 OD1 A:ASP2357 4.6 69.0 1.0 OD2 A:ASP2338 4.6 52.3 1.0 CG A:ASN2343 4.6 60.7 1.0 O3A A:ADP2601 4.9 82.5 1.0 O1A A:ADP2601 4.9 79.6 1.0 CD2 A:HIS2340 5.0 53.2 1.0

W.C.Lau, Y.Li, Z.Liu, Y.Gao, Q.Zhang, M.S.Huen. Structure of the Human Dimeric Atm Kinase. Cell Cycle V. 15 1117 2016.
ISSN: ESSN 1551-4005
PubMed: 27097373
DOI: 10.1080/15384101.2016.1158362