Magnesium in PDB 3jcu: Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Other elements in 3jcu:
The structure of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
206;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
(pdb code 3jcu). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 206 binding sites of Magnesium where determined in the
Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution, PDB code: 3jcu:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 1 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:45.6
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
45.6
|
1.0
|
NB
|
A:CLA405
|
2.0
|
48.0
|
1.0
|
ND
|
A:CLA405
|
2.0
|
41.8
|
1.0
|
NC
|
A:CLA405
|
2.1
|
43.5
|
1.0
|
NA
|
A:CLA405
|
2.1
|
50.2
|
1.0
|
NE2
|
A:HIS198
|
2.2
|
51.4
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
48.5
|
1.0
|
CE1
|
A:HIS198
|
3.0
|
52.2
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
51.8
|
1.0
|
C4B
|
A:CLA405
|
3.0
|
46.7
|
1.0
|
C4A
|
A:CLA405
|
3.0
|
51.8
|
1.0
|
C1C
|
A:CLA405
|
3.0
|
44.1
|
1.0
|
C1A
|
A:CLA405
|
3.1
|
53.8
|
1.0
|
C4C
|
A:CLA405
|
3.1
|
49.5
|
1.0
|
C1D
|
A:CLA405
|
3.1
|
42.6
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
56.5
|
1.0
|
CD2
|
A:HIS198
|
3.4
|
49.8
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
45.8
|
1.0
|
CHA
|
A:CLA405
|
3.4
|
50.1
|
1.0
|
CHD
|
A:CLA405
|
3.5
|
49.4
|
1.0
|
CE
|
A:MET183
|
3.6
|
63.5
|
1.0
|
CAB
|
D:CLA402
|
3.8
|
48.2
|
1.0
|
ND1
|
A:HIS198
|
4.2
|
49.1
|
1.0
|
C3D
|
A:CLA405
|
4.2
|
48.8
|
1.0
|
C2B
|
A:CLA405
|
4.3
|
51.8
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
47.9
|
1.0
|
C2C
|
A:CLA405
|
4.3
|
50.9
|
1.0
|
C2D
|
A:CLA405
|
4.3
|
44.2
|
1.0
|
C3C
|
A:CLA405
|
4.3
|
51.4
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
54.4
|
1.0
|
C2A
|
A:CLA405
|
4.4
|
62.5
|
1.0
|
CG
|
A:HIS198
|
4.4
|
48.3
|
1.0
|
CBB
|
D:CLA402
|
4.5
|
53.5
|
1.0
|
C3B
|
D:CLA402
|
4.8
|
42.6
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
53.2
|
1.0
|
CHC
|
D:CLA402
|
4.9
|
40.6
|
1.0
|
|
Magnesium binding site 2 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 2 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:37.0
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
37.0
|
1.0
|
NB
|
A:CLA406
|
2.0
|
45.5
|
1.0
|
ND
|
A:CLA406
|
2.0
|
49.2
|
1.0
|
NC
|
A:CLA406
|
2.1
|
52.7
|
1.0
|
NA
|
A:CLA406
|
2.1
|
66.5
|
1.0
|
C4D
|
A:CLA406
|
2.9
|
58.7
|
1.0
|
C1B
|
A:CLA406
|
3.0
|
48.4
|
1.0
|
C4A
|
A:CLA406
|
3.0
|
59.9
|
1.0
|
C4B
|
A:CLA406
|
3.0
|
45.4
|
1.0
|
C1C
|
A:CLA406
|
3.0
|
47.7
|
1.0
|
C4C
|
A:CLA406
|
3.1
|
53.4
|
1.0
|
C1A
|
A:CLA406
|
3.1
|
63.1
|
1.0
|
C1D
|
A:CLA406
|
3.1
|
48.2
|
1.0
|
CHB
|
A:CLA406
|
3.4
|
53.9
|
1.0
|
CHC
|
A:CLA406
|
3.4
|
47.8
|
1.0
|
CHA
|
A:CLA406
|
3.4
|
60.4
|
1.0
|
CHD
|
A:CLA406
|
3.5
|
55.6
|
1.0
|
CBB
|
A:PHO408
|
3.8
|
64.9
|
1.0
|
C3D
|
A:CLA406
|
4.2
|
51.5
|
1.0
|
C2B
|
A:CLA406
|
4.3
|
47.3
|
1.0
|
C3B
|
A:CLA406
|
4.3
|
49.7
|
1.0
|
C2C
|
A:CLA406
|
4.3
|
55.4
|
1.0
|
CG2
|
A:THR179
|
4.3
|
62.1
|
1.0
|
C3C
|
A:CLA406
|
4.3
|
58.5
|
1.0
|
C2D
|
A:CLA406
|
4.3
|
42.3
|
1.0
|
C3A
|
A:CLA406
|
4.4
|
72.4
|
1.0
|
C2A
|
A:CLA406
|
4.4
|
64.3
|
1.0
|
CBA
|
A:CLA406
|
4.7
|
75.6
|
1.0
|
OG1
|
A:THR179
|
4.8
|
56.7
|
1.0
|
C19
|
A:PHO408
|
4.8
|
0.9
|
1.0
|
CBD
|
A:CLA406
|
4.9
|
50.8
|
1.0
|
|
Magnesium binding site 3 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 3 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:51.3
occ:1.00
|
MG
|
A:CLA407
|
0.0
|
51.3
|
1.0
|
NB
|
A:CLA407
|
2.0
|
54.4
|
1.0
|
ND
|
A:CLA407
|
2.0
|
54.8
|
1.0
|
NC
|
A:CLA407
|
2.1
|
54.4
|
1.0
|
NA
|
A:CLA407
|
2.1
|
70.4
|
1.0
|
C4D
|
A:CLA407
|
2.9
|
57.0
|
1.0
|
C1B
|
A:CLA407
|
3.0
|
52.6
|
1.0
|
C4A
|
A:CLA407
|
3.0
|
70.6
|
1.0
|
C4B
|
A:CLA407
|
3.0
|
55.4
|
1.0
|
C1C
|
A:CLA407
|
3.1
|
59.3
|
1.0
|
C4C
|
A:CLA407
|
3.1
|
58.1
|
1.0
|
C1A
|
A:CLA407
|
3.1
|
66.0
|
1.0
|
C1D
|
A:CLA407
|
3.1
|
54.1
|
1.0
|
CHB
|
A:CLA407
|
3.4
|
64.7
|
1.0
|
CHC
|
A:CLA407
|
3.4
|
59.9
|
1.0
|
CHA
|
A:CLA407
|
3.4
|
59.5
|
1.0
|
CHD
|
A:CLA407
|
3.5
|
59.1
|
1.0
|
CBB
|
A:PHO409
|
3.9
|
91.7
|
1.0
|
C3D
|
A:CLA407
|
4.2
|
53.0
|
1.0
|
C2B
|
A:CLA407
|
4.3
|
53.5
|
1.0
|
C3B
|
A:CLA407
|
4.3
|
55.9
|
1.0
|
C2C
|
A:CLA407
|
4.3
|
72.3
|
1.0
|
C2D
|
A:CLA407
|
4.3
|
50.1
|
1.0
|
C3C
|
A:CLA407
|
4.3
|
74.2
|
1.0
|
C3A
|
A:CLA407
|
4.4
|
79.7
|
1.0
|
C2A
|
A:CLA407
|
4.4
|
69.0
|
1.0
|
CG2
|
D:ILE178
|
4.7
|
80.8
|
1.0
|
CBA
|
A:CLA407
|
4.9
|
86.5
|
1.0
|
CBD
|
A:CLA407
|
4.9
|
53.5
|
1.0
|
CE2
|
A:PHE206
|
4.9
|
51.1
|
1.0
|
CG1
|
D:ILE178
|
4.9
|
76.7
|
1.0
|
|
Magnesium binding site 4 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 4 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg410
b:37.8
occ:1.00
|
MG
|
A:CLA410
|
0.0
|
37.8
|
1.0
|
NB
|
A:CLA410
|
2.0
|
38.5
|
1.0
|
ND
|
A:CLA410
|
2.0
|
42.7
|
1.0
|
NA
|
A:CLA410
|
2.1
|
56.0
|
1.0
|
NC
|
A:CLA410
|
2.1
|
44.2
|
1.0
|
NE2
|
A:HIS118
|
2.2
|
60.5
|
1.0
|
C4D
|
A:CLA410
|
2.9
|
49.4
|
1.0
|
C1B
|
A:CLA410
|
3.0
|
40.8
|
1.0
|
C4A
|
A:CLA410
|
3.0
|
57.8
|
1.0
|
C4B
|
A:CLA410
|
3.0
|
43.2
|
1.0
|
C1C
|
A:CLA410
|
3.0
|
43.8
|
1.0
|
C1A
|
A:CLA410
|
3.1
|
55.6
|
1.0
|
C4C
|
A:CLA410
|
3.1
|
48.2
|
1.0
|
C1D
|
A:CLA410
|
3.1
|
46.8
|
1.0
|
CD2
|
A:HIS118
|
3.1
|
55.1
|
1.0
|
CE1
|
A:HIS118
|
3.2
|
54.5
|
1.0
|
CHB
|
A:CLA410
|
3.4
|
47.6
|
1.0
|
CHC
|
A:CLA410
|
3.4
|
44.4
|
1.0
|
CHA
|
A:CLA410
|
3.4
|
52.9
|
1.0
|
CHD
|
A:CLA410
|
3.5
|
49.5
|
1.0
|
CG2
|
I:VAL12
|
3.8
|
74.0
|
1.0
|
C3D
|
A:CLA410
|
4.2
|
52.8
|
1.0
|
C2B
|
A:CLA410
|
4.2
|
41.8
|
1.0
|
C3B
|
A:CLA410
|
4.3
|
45.3
|
1.0
|
ND1
|
A:HIS118
|
4.3
|
50.4
|
1.0
|
C2C
|
A:CLA410
|
4.3
|
50.2
|
1.0
|
CG
|
A:HIS118
|
4.3
|
49.7
|
1.0
|
C2D
|
A:CLA410
|
4.3
|
51.0
|
1.0
|
CG1
|
I:VAL8
|
4.3
|
66.6
|
1.0
|
C3C
|
A:CLA410
|
4.3
|
48.9
|
1.0
|
C3A
|
A:CLA410
|
4.4
|
71.9
|
1.0
|
C2A
|
A:CLA410
|
4.4
|
61.7
|
1.0
|
CBA
|
A:CLA410
|
4.7
|
79.5
|
1.0
|
CBD
|
A:CLA410
|
4.9
|
52.0
|
1.0
|
|
Magnesium binding site 5 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 5 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:56.6
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
56.6
|
1.0
|
NB
|
B:CLA602
|
2.0
|
72.2
|
1.0
|
ND
|
B:CLA602
|
2.0
|
87.8
|
1.0
|
NC
|
B:CLA602
|
2.1
|
74.8
|
1.0
|
NA
|
B:CLA602
|
2.1
|
95.9
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
98.4
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
79.6
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
90.2
|
1.0
|
C4B
|
B:CLA602
|
3.1
|
69.6
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
70.2
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
80.8
|
1.0
|
C1D
|
B:CLA602
|
3.1
|
92.3
|
1.0
|
C1A
|
B:CLA602
|
3.1
|
0.8
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
88.5
|
1.0
|
C12
|
B:CLA602
|
3.4
|
0.8
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
68.0
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
100.0
|
1.0
|
C14
|
B:CLA602
|
3.5
|
0.1
|
1.0
|
CHD
|
B:CLA602
|
3.5
|
92.4
|
1.0
|
O
|
B:TRP185
|
3.8
|
81.3
|
1.0
|
C13
|
B:CLA602
|
4.0
|
0.2
|
1.0
|
C3D
|
B:CLA602
|
4.2
|
0.8
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
74.6
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
69.6
|
1.0
|
C11
|
B:CLA602
|
4.3
|
0.1
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
79.5
|
1.0
|
C2D
|
B:CLA602
|
4.3
|
0.7
|
1.0
|
C3C
|
B:CLA602
|
4.3
|
76.7
|
1.0
|
C10
|
B:CLA602
|
4.3
|
0.2
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
0.5
|
1.0
|
C2A
|
B:CLA602
|
4.5
|
0.4
|
1.0
|
C16
|
B:CLA602
|
4.6
|
0.8
|
1.0
|
CE2
|
B:PHE190
|
4.8
|
90.4
|
1.0
|
C15
|
B:CLA602
|
4.9
|
0.5
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
99.1
|
1.0
|
|
Magnesium binding site 6 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 6 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:51.9
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
51.9
|
1.0
|
NB
|
B:CLA603
|
2.0
|
57.9
|
1.0
|
ND
|
B:CLA603
|
2.0
|
50.6
|
1.0
|
NA
|
B:CLA603
|
2.1
|
61.3
|
1.0
|
NC
|
B:CLA603
|
2.1
|
56.5
|
1.0
|
ND1
|
B:HIS201
|
2.2
|
62.9
|
1.0
|
CE1
|
B:HIS201
|
2.8
|
60.5
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
56.0
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
61.7
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
58.5
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
63.3
|
1.0
|
C1C
|
B:CLA603
|
3.0
|
59.5
|
1.0
|
C1A
|
B:CLA603
|
3.1
|
64.5
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
55.4
|
1.0
|
C1D
|
B:CLA603
|
3.1
|
53.5
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
65.5
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
60.8
|
1.0
|
CG
|
B:HIS201
|
3.4
|
55.2
|
1.0
|
CHA
|
B:CLA603
|
3.4
|
62.1
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
57.7
|
1.0
|
CZ
|
H:PHE53
|
3.5
|
72.5
|
1.0
|
NE2
|
B:HIS201
|
4.0
|
55.1
|
1.0
|
CB
|
B:HIS201
|
4.0
|
56.0
|
1.0
|
CE2
|
H:PHE53
|
4.1
|
67.0
|
1.0
|
C3B
|
B:CLA603
|
4.2
|
63.4
|
1.0
|
C2B
|
B:CLA603
|
4.2
|
60.3
|
1.0
|
C3D
|
B:CLA603
|
4.2
|
56.9
|
1.0
|
CD2
|
B:HIS201
|
4.3
|
52.2
|
1.0
|
C2C
|
B:CLA603
|
4.3
|
61.4
|
1.0
|
C2D
|
B:CLA603
|
4.3
|
54.2
|
1.0
|
C3C
|
B:CLA603
|
4.3
|
59.4
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
71.8
|
1.0
|
C2A
|
B:CLA603
|
4.4
|
64.7
|
1.0
|
CA
|
B:HIS201
|
4.6
|
52.2
|
1.0
|
CE1
|
H:PHE53
|
4.6
|
69.1
|
1.0
|
CE1
|
B:PHE190
|
4.7
|
79.4
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
61.2
|
1.0
|
|
Magnesium binding site 7 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 7 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:36.0
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
36.0
|
1.0
|
NB
|
B:CLA604
|
2.0
|
43.2
|
1.0
|
ND
|
B:CLA604
|
2.0
|
43.6
|
1.0
|
NC
|
B:CLA604
|
2.1
|
47.1
|
1.0
|
NA
|
B:CLA604
|
2.1
|
51.7
|
1.0
|
NE2
|
B:HIS202
|
2.2
|
46.0
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
49.2
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
46.0
|
1.0
|
C4A
|
B:CLA604
|
3.0
|
51.8
|
1.0
|
C4B
|
B:CLA604
|
3.0
|
47.5
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
50.6
|
1.0
|
CE1
|
B:HIS202
|
3.1
|
47.8
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
46.7
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
47.1
|
1.0
|
C1A
|
B:CLA604
|
3.1
|
51.7
|
1.0
|
CD2
|
B:HIS202
|
3.2
|
46.7
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
50.5
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
52.6
|
1.0
|
CHA
|
B:CLA604
|
3.4
|
50.4
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
52.6
|
1.0
|
C9
|
B:CLA606
|
4.0
|
76.5
|
1.0
|
C6
|
B:CLA606
|
4.2
|
71.4
|
1.0
|
ND1
|
B:HIS202
|
4.2
|
43.7
|
1.0
|
C3D
|
B:CLA604
|
4.2
|
49.0
|
1.0
|
C2B
|
B:CLA604
|
4.2
|
50.1
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
46.4
|
1.0
|
CG
|
B:HIS202
|
4.3
|
43.4
|
1.0
|
C2C
|
B:CLA604
|
4.3
|
51.6
|
1.0
|
C2D
|
B:CLA604
|
4.3
|
47.5
|
1.0
|
C3C
|
B:CLA604
|
4.3
|
49.4
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
56.7
|
1.0
|
C2A
|
B:CLA604
|
4.4
|
53.5
|
1.0
|
C7
|
B:CLA606
|
4.6
|
73.1
|
1.0
|
CBA
|
B:CLA604
|
4.8
|
64.1
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
48.5
|
1.0
|
CD2
|
B:HIS201
|
4.9
|
52.2
|
1.0
|
C8
|
B:CLA606
|
4.9
|
72.4
|
1.0
|
O2A
|
B:CLA604
|
5.0
|
56.0
|
1.0
|
|
Magnesium binding site 8 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 8 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:43.2
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
43.2
|
1.0
|
NB
|
B:CLA605
|
2.0
|
45.4
|
1.0
|
ND
|
B:CLA605
|
2.0
|
45.5
|
1.0
|
NC
|
B:CLA605
|
2.1
|
40.8
|
1.0
|
NA
|
B:CLA605
|
2.1
|
52.7
|
1.0
|
NE2
|
B:HIS455
|
2.2
|
51.8
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
49.5
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
44.9
|
1.0
|
CE1
|
B:HIS455
|
3.0
|
53.0
|
1.0
|
C4A
|
B:CLA605
|
3.0
|
51.7
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
45.1
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
45.2
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
41.7
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
47.6
|
1.0
|
C1A
|
B:CLA605
|
3.1
|
50.8
|
1.0
|
CD2
|
B:HIS455
|
3.2
|
57.2
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
48.6
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
46.9
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
49.9
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
45.1
|
1.0
|
C14
|
B:CLA613
|
3.7
|
74.7
|
1.0
|
ND1
|
B:HIS455
|
4.2
|
51.0
|
1.0
|
C3D
|
B:CLA605
|
4.2
|
51.2
|
1.0
|
C2B
|
B:CLA605
|
4.3
|
48.2
|
1.0
|
CG
|
B:HIS455
|
4.3
|
55.7
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
47.7
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
48.1
|
1.0
|
C2D
|
B:CLA605
|
4.3
|
53.1
|
1.0
|
C3C
|
B:CLA605
|
4.3
|
44.4
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
59.0
|
1.0
|
C13
|
B:CLA613
|
4.4
|
70.3
|
1.0
|
C2A
|
B:CLA605
|
4.4
|
57.1
|
1.0
|
C15
|
B:CLA613
|
4.5
|
73.9
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
48.8
|
1.0
|
CE1
|
B:PHE451
|
4.9
|
54.4
|
1.0
|
|
Magnesium binding site 9 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 9 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:44.7
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
44.7
|
1.0
|
NB
|
B:CLA606
|
2.0
|
48.1
|
1.0
|
ND
|
B:CLA606
|
2.0
|
47.2
|
1.0
|
NC
|
B:CLA606
|
2.1
|
53.0
|
1.0
|
NA
|
B:CLA606
|
2.1
|
64.2
|
1.0
|
NE2
|
B:HIS100
|
2.3
|
50.1
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
51.3
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
50.0
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
56.4
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
49.9
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
50.1
|
1.0
|
CE1
|
B:HIS100
|
3.1
|
49.0
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
54.7
|
1.0
|
C1A
|
B:CLA606
|
3.1
|
63.5
|
1.0
|
C1D
|
B:CLA606
|
3.1
|
51.8
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
52.2
|
1.0
|
CD2
|
B:HIS100
|
3.4
|
50.3
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
50.4
|
1.0
|
CHA
|
B:CLA606
|
3.4
|
51.4
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
55.0
|
1.0
|
C1
|
B:CLA605
|
3.9
|
89.3
|
1.0
|
C4
|
B:CLA605
|
4.2
|
99.1
|
1.0
|
C3D
|
B:CLA606
|
4.2
|
48.9
|
1.0
|
C2B
|
B:CLA606
|
4.2
|
53.9
|
1.0
|
ND1
|
B:HIS100
|
4.3
|
44.5
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
51.1
|
1.0
|
C2C
|
B:CLA606
|
4.3
|
51.9
|
1.0
|
C2D
|
B:CLA606
|
4.3
|
50.3
|
1.0
|
C3C
|
B:CLA606
|
4.3
|
55.8
|
1.0
|
C2
|
B:CLA605
|
4.4
|
97.2
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
64.5
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
72.7
|
1.0
|
CG
|
B:HIS100
|
4.5
|
46.3
|
1.0
|
C3
|
B:CLA605
|
4.5
|
99.6
|
1.0
|
CBA
|
B:CLA606
|
4.7
|
90.8
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
46.5
|
1.0
|
C4
|
B:CLA607
|
5.0
|
89.7
|
1.0
|
|
Magnesium binding site 10 out
of 206 in 3jcu
Go back to
Magnesium Binding Sites List in 3jcu
Magnesium binding site 10 out
of 206 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:48.6
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
48.6
|
1.0
|
NB
|
B:CLA607
|
2.0
|
50.4
|
1.0
|
ND
|
B:CLA607
|
2.0
|
65.2
|
1.0
|
NA
|
B:CLA607
|
2.1
|
64.4
|
1.0
|
NC
|
B:CLA607
|
2.1
|
53.1
|
1.0
|
ND1
|
B:HIS157
|
2.2
|
50.4
|
1.0
|
CE1
|
B:HIS157
|
2.5
|
50.9
|
1.0
|
C4D
|
B:CLA607
|
2.9
|
71.6
|
1.0
|
C1B
|
B:CLA607
|
3.0
|
52.6
|
1.0
|
C4A
|
B:CLA607
|
3.0
|
56.4
|
1.0
|
C4B
|
B:CLA607
|
3.0
|
47.6
|
1.0
|
C1C
|
B:CLA607
|
3.1
|
53.1
|
1.0
|
C4C
|
B:CLA607
|
3.1
|
54.7
|
1.0
|
C1A
|
B:CLA607
|
3.1
|
72.5
|
1.0
|
C1D
|
B:CLA607
|
3.1
|
63.4
|
1.0
|
CG
|
B:HIS157
|
3.3
|
49.8
|
1.0
|
CHB
|
B:CLA607
|
3.4
|
52.3
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
50.9
|
1.0
|
CHA
|
B:CLA607
|
3.4
|
69.5
|
1.0
|
CHD
|
B:CLA607
|
3.5
|
62.3
|
1.0
|
NE2
|
B:HIS157
|
3.5
|
45.6
|
1.0
|
CD2
|
B:HIS157
|
4.0
|
49.5
|
1.0
|
CB
|
B:HIS157
|
4.1
|
54.7
|
1.0
|
C3D
|
B:CLA607
|
4.2
|
74.7
|
1.0
|
C2B
|
B:CLA607
|
4.3
|
55.2
|
1.0
|
C3B
|
B:CLA607
|
4.3
|
51.8
|
1.0
|
C2C
|
B:CLA607
|
4.3
|
58.8
|
1.0
|
C2D
|
B:CLA607
|
4.3
|
71.2
|
1.0
|
C3C
|
B:CLA607
|
4.3
|
58.3
|
1.0
|
C3A
|
B:CLA607
|
4.4
|
66.6
|
1.0
|
C2A
|
B:CLA607
|
4.4
|
75.2
|
1.0
|
CBA
|
B:CLA607
|
4.7
|
77.3
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
65.6
|
1.0
|
CD
|
B:PRO164
|
4.9
|
70.7
|
1.0
|
|
Reference:
X.P.Wei,
X.D.Su,
P.Cao,
X.Y.Liu,
W.R.Chang,
M.Li,
X.Z.Zhang,
Z.F.Liu.
Structure of Spinach Photosystem II-Lhcii Supercomplex at 3.2 A Resolution Nature V. 534 69 2016.
ISSN: ISSN 0028-0836
DOI: 10.1038/NATURE18020
Page generated: Wed Aug 14 17:10:01 2024
|