Magnesium in PDB 3k4i: Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000

The structure of Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000, PDB code: 3k4i was solved by V.N.Malashkevich, R.Toro, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.69
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.442, 124.857, 66.912, 90.00, 97.99, 90.00
R / Rfree (%)	17.8 / 21.4

The structure of Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000 also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000 (pdb code 3k4i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000, PDB code: 3k4i:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:15.2 occ:1.00 O A:HOH245 2.0 7.5 1.0 O C:HOH325 2.0 15.1 1.0 O C:HOH326 2.1 22.2 1.0 OD2 A:ASP102 2.1 10.2 1.0 O A:HOH303 2.2 11.9 1.0 OE1 C:GLU200 2.4 26.0 1.0 CG A:ASP102 3.1 9.7 1.0 CD C:GLU200 3.4 18.9 1.0 OD1 A:ASP102 3.4 11.1 1.0 OE2 C:GLU200 3.7 26.9 1.0 O C:HOH314 3.8 16.4 1.0 OD1 A:ASP124 3.9 11.6 1.0 OD2 A:ASP124 3.9 9.1 1.0 OD1 C:ASP24 4.0 20.4 1.0 CG A:ASP124 4.2 7.1 1.0 OG C:SER27 4.3 17.5 1.0 O C:HOH379 4.3 25.5 1.0 CB A:ASP102 4.4 8.6 1.0 CG C:GLU200 4.7 26.9 1.0 O A:HOH322 4.7 22.4 1.0 CB C:ALA26 4.7 5.3 1.0 CB C:GLU200 4.8 15.6 1.0 CG C:ASP24 5.0 18.2 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:21.4 occ:1.00 O B:HOH252 2.0 26.3 1.0 O B:HOH255 2.0 21.0 1.0 OD2 B:ASP102 2.0 18.8 1.0 O A:HOH309 2.1 21.0 1.0 O B:HOH308 2.2 16.6 1.0 OE1 A:GLU200 2.2 26.2 1.0 CG B:ASP102 3.1 26.1 1.0 CD A:GLU200 3.4 18.9 1.0 OD1 B:ASP102 3.5 18.5 1.0 O A:HOH310 3.9 18.6 1.0 OE2 A:GLU200 3.9 26.4 1.0 OD1 B:ASP124 4.0 17.0 1.0 OD2 B:ASP124 4.0 16.7 1.0 OD1 A:ASP24 4.1 19.6 1.0 OG A:SER27 4.1 13.3 1.0 CG B:ASP124 4.3 14.6 1.0 O A:HOH372 4.3 23.3 1.0 CB B:ASP102 4.4 16.9 1.0 CG A:GLU200 4.6 26.2 1.0 CB A:GLU200 4.6 17.0 1.0 O B:HOH371 4.8 30.7 1.0 CB A:ALA26 4.9 10.4 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:21.0 occ:1.00 O B:HOH270 2.0 20.7 1.0 O C:HOH248 2.0 16.0 1.0 O C:HOH274 2.0 18.4 1.0 O B:HOH267 2.0 23.5 1.0 OD2 C:ASP102 2.1 12.6 1.0 OE1 B:GLU200 2.2 29.0 1.0 CG C:ASP102 3.0 8.6 1.0 CD B:GLU200 3.3 23.3 1.0 OD1 C:ASP102 3.4 11.4 1.0 O B:HOH250 3.7 23.6 1.0 OD1 B:ASP24 3.7 27.2 1.0 OE2 B:GLU200 3.8 29.2 1.0 OD1 C:ASP124 3.8 12.9 1.0 O C:HOH389 4.0 35.9 1.0 OD2 C:ASP124 4.0 11.4 1.0 CG C:ASP124 4.2 12.4 1.0 OG B:SER27 4.3 28.0 1.0 CB C:ASP102 4.3 10.0 1.0 CG B:GLU200 4.5 29.4 1.0 CB B:ALA26 4.6 11.6 1.0 CB B:GLU200 4.6 21.5 1.0 CG B:ASP24 4.8 32.8 1.0

V.N.Malashkevich, R.Toro, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Uncharacterized Protein PSPTO_3204 From Pseudomonas Syringae Pv. Tomato Str. DC3000 To Be Published.