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Magnesium in PDB 3k5e: The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol.

Enzymatic activity of The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol.

All present enzymatic activity of The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol.:
3.6.4.4;

Protein crystallography data

The structure of The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol., PDB code: 3k5e was solved by L.Crawley, R.K.Y.Cheng, M.Wood, J.Barker, B.Felicetti, M.Whittaker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.90 / 1.97
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 160.580, 79.800, 69.190, 90.00, 96.93, 90.00
R / Rfree (%) 24.1 / 29.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol. (pdb code 3k5e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol., PDB code: 3k5e:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3k5e

Go back to Magnesium Binding Sites List in 3k5e
Magnesium binding site 1 out of 2 in the The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg604

b:26.3
occ:1.00
O A:HOH425 2.1 15.3 1.0
O3B A:ADP603 2.1 16.0 1.0
O A:HOH441 2.1 18.6 1.0
O A:HOH442 2.1 15.6 1.0
OG1 A:THR112 2.2 14.3 1.0
O A:HOH494 2.2 18.3 1.0
CB A:THR112 3.2 13.8 1.0
PB A:ADP603 3.2 19.7 1.0
O1B A:ADP603 3.5 18.7 1.0
N A:THR112 3.9 13.0 1.0
O2A A:ADP603 4.0 16.9 1.0
CA A:THR112 4.1 13.2 1.0
O A:HOH370 4.2 14.9 1.0
O A:SER232 4.2 15.6 1.0
O3A A:ADP603 4.3 16.6 1.0
OD2 A:ASP265 4.3 18.1 1.0
O2B A:ADP603 4.3 16.8 1.0
CG2 A:THR112 4.4 14.4 1.0
O A:HOH405 4.4 21.4 1.0
O A:HOH375 4.4 13.8 1.0
PA A:ADP603 4.4 17.9 1.0
O1A A:ADP603 4.4 19.9 1.0
OD1 A:ASP265 4.5 15.9 1.0
O A:HOH450 4.8 14.9 1.0
CB A:LYS111 4.8 11.2 1.0
CG A:ASP265 4.8 14.4 1.0
C A:LYS111 4.9 12.0 1.0
CE A:LYS111 5.0 12.1 1.0
NZ A:LYS111 5.0 8.5 1.0

Magnesium binding site 2 out of 2 in 3k5e

Go back to Magnesium Binding Sites List in 3k5e
Magnesium binding site 2 out of 2 in the The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg606

b:17.4
occ:1.00
O3B B:ADP605 2.0 14.6 1.0
OG1 B:THR112 2.0 12.8 1.0
O B:HOH397 2.1 11.1 1.0
O B:HOH529 2.1 24.2 1.0
O B:HOH444 2.2 20.1 1.0
O B:HOH443 2.2 19.6 1.0
CB B:THR112 3.0 13.4 1.0
PB B:ADP605 3.1 19.2 1.0
O1B B:ADP605 3.4 19.9 1.0
N B:THR112 3.7 12.9 1.0
CA B:THR112 3.9 13.2 1.0
O2A B:ADP605 4.0 23.4 1.0
O3A B:ADP605 4.1 20.5 1.0
O B:HOH422 4.1 21.9 1.0
CG2 B:THR112 4.2 13.0 1.0
OD2 B:ASP265 4.2 18.4 1.0
O2B B:ADP605 4.2 18.1 1.0
O B:SER232 4.3 15.8 1.0
PA B:ADP605 4.3 21.9 1.0
OD1 B:ASP265 4.3 18.6 1.0
O B:HOH409 4.4 16.5 1.0
O1A B:ADP605 4.4 22.1 1.0
O B:HOH532 4.4 26.7 1.0
O B:HOH432 4.5 21.5 1.0
CG B:ASP265 4.7 14.8 1.0
CB B:LYS111 4.8 13.7 1.0
C B:LYS111 4.8 12.7 1.0
CE B:LYS111 4.9 12.7 1.0
O B:HOH480 5.0 21.5 1.0

Reference:

L.Crawley, R.K.Y.Cheng, M.Wood, J.Barker, B.Felicetti, M.Whittaker. The Structure of Human Kinesin-Like Motor Protein KIF11/Ksp/EG5 in Complex with Adp and Enastrol. To Be Published.
Page generated: Mon Dec 14 08:21:28 2020

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