Magnesium in PDB 3kb2: Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256

The structure of Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256, PDB code: 3kb2 was solved by F.Forouhar, D.Friedman, J.Seetharaman, J.Janjua, R.Xiao, K.Cunningham, L.Ma, C.Ho, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.61 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.478, 63.050, 70.456, 90.00, 91.57, 90.00
R / Rfree (%)	19.5 / 26.2

The binding sites of Magnesium atom in the Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256 (pdb code 3kb2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256, PDB code: 3kb2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg181 b:21.6 occ:1.00 O3B A:G3D180 2.2 19.5 1.0 O A:HOH268 2.3 34.5 1.0 O A:HOH270 2.3 25.2 1.0 O B:HOH231 2.3 36.6 1.0 OG A:SER15 2.3 22.0 1.0 O A:HOH269 2.4 15.1 1.0 CB A:SER15 3.4 16.2 1.0 PB A:G3D180 3.5 19.0 1.0 O A:HOH235 3.6 37.3 1.0 O1B A:G3D180 3.7 17.9 1.0 OD1 A:ASP61 3.9 18.8 1.0 O A:HOH174 4.2 27.4 1.0 N A:SER15 4.2 15.7 1.0 NE B:ARG115 4.2 81.4 1.0 O A:HOH196 4.3 19.8 1.0 O2B A:G3D180 4.3 17.7 1.0 CA A:SER15 4.4 10.4 1.0 OD2 A:ASP61 4.4 16.1 1.0 O2A A:G3D180 4.5 26.6 1.0 OD2 B:ASP117 4.5 90.9 1.0 CG A:ASP61 4.5 11.7 1.0 O3A A:G3D180 4.6 26.8 1.0 CE A:LYS31 4.7 60.2 1.0 CG B:ASP117 4.7 89.0 1.0 CB B:ASP117 4.8 82.2 1.0 NZ A:LYS14 4.8 6.7 1.0 NH2 B:ARG115 4.9 68.2 1.0 CD B:ARG115 5.0 85.2 1.0 PA A:G3D180 5.0 20.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Yorr Protein in Complex with Phosphorylated Gdp From Bacillus Subtilis, Northeast Structural Genomics Consortium Target SR256 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg181 b:32.5 occ:1.00 O3B B:G3D180 2.5 24.4 1.0 O B:HOH176 2.5 27.6 1.0 OG B:SER15 2.5 42.6 1.0 O B:HOH175 2.6 21.7 1.0 OD1 B:ASP61 3.0 29.5 1.0 CB B:SER15 3.7 26.4 1.0 CG B:ASP61 3.8 27.6 1.0 OD2 B:ASP61 3.8 28.7 1.0 PB B:G3D180 3.9 27.6 1.0 N B:SER15 4.0 20.9 1.0 O1B B:G3D180 4.2 27.6 1.0 CA B:SER15 4.3 23.7 1.0 CB B:LYS14 4.4 22.4 1.0 O2A B:G3D180 4.4 49.8 1.0 NH2 B:ARG62 4.5 51.8 1.0 NZ B:LYS14 4.5 35.1 1.0 CE B:LYS14 4.6 23.1 1.0 O2B B:G3D180 4.7 29.8 1.0 O3A B:G3D180 4.8 40.4 1.0 C B:LYS14 4.9 22.6 1.0

F.Forouhar, D.Friedman, J.Seetharaman, J.Janjua, R.Xiao, K.Cunningham, L.Ma, C.Ho, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt. Northeast Structural Genomics Consortium Target SR256 To Be Published.