Atomistry » Magnesium » PDB 3k9l-3kk1 » 3kb3
Atomistry »
  Magnesium »
    PDB 3k9l-3kk1 »
      3kb3 »

Magnesium in PDB 3kb3: Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1

Enzymatic activity of Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1

All present enzymatic activity of Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1:
3.1.3.16;

Protein crystallography data

The structure of Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1, PDB code: 3kb3 was solved by X.E.Zhou, K.Melcher, F.-F.Soon, L.-M.Ng, Y.Xu, K.M.Suino-Powell, A.Kovach, J.Li, H.E.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.52 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.319, 67.466, 143.905, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 25.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1 (pdb code 3kb3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1, PDB code: 3kb3:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3kb3

Go back to Magnesium Binding Sites List in 3kb3
Magnesium binding site 1 out of 3 in the Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg997

b:47.7
occ:1.00
OD1 B:ASP432 2.5 36.8 1.0
OD2 B:ASP243 2.7 30.8 1.0
O B:HOH33 2.8 42.8 1.0
O B:HOH120 3.0 47.3 1.0
OD1 B:ASP492 3.0 58.5 1.0
CG B:ASP492 3.2 52.1 1.0
OD1 B:ASP243 3.2 34.8 1.0
CG B:ASP243 3.3 30.2 1.0
OD2 B:ASP492 3.3 56.6 1.0
CG B:ASP432 3.5 33.7 1.0
OD2 B:ASP432 3.7 40.9 1.0
O B:HOH89 4.0 39.3 1.0
CB B:ASP492 4.1 46.9 1.0
MG B:MG998 4.5 42.2 1.0
MG B:MG999 4.6 37.7 1.0
N B:GLY433 4.6 27.0 1.0
O B:HOH46 4.8 31.0 1.0
CB B:ASP243 4.8 27.2 1.0
CB B:ASP432 4.8 29.7 1.0
N B:ASP432 4.9 28.6 1.0
O B:ASN493 4.9 26.4 1.0
O B:HOH36 4.9 40.4 1.0
C B:ASP432 5.0 28.0 1.0

Magnesium binding site 2 out of 3 in 3kb3

Go back to Magnesium Binding Sites List in 3kb3
Magnesium binding site 2 out of 3 in the Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg998

b:42.2
occ:1.00
OD1 B:ASP243 2.6 34.8 1.0
OD1 B:ASN493 2.8 27.1 1.0
OD1 B:ASP204 2.8 37.4 1.0
O B:GLY244 2.8 26.6 1.0
C B:GLU203 3.5 28.7 1.0
N B:ASP204 3.5 29.1 1.0
CG B:ASN493 3.6 27.3 1.0
N B:GLY244 3.7 26.6 1.0
O B:HOH120 3.7 47.3 1.0
CB B:GLU203 3.7 29.8 1.0
C B:GLY244 3.8 25.4 1.0
CG B:ASP204 3.8 30.8 1.0
O B:GLU203 3.8 28.6 1.0
CG B:ASP243 3.8 30.2 1.0
CB B:ASN493 3.9 29.2 1.0
CA B:GLU203 4.0 28.6 1.0
CA B:GLY244 4.1 25.6 1.0
C B:ASP243 4.2 25.9 1.0
CA B:ASP204 4.2 29.3 1.0
N B:GLU203 4.2 28.5 1.0
O B:HOH33 4.3 42.8 1.0
OD1 B:ASP492 4.3 58.5 1.0
CA B:ASP243 4.4 26.7 1.0
CB B:ASP204 4.5 29.3 1.0
O B:HOH63 4.5 43.4 1.0
MG B:MG997 4.5 47.7 1.0
OE1 B:GLU203 4.6 28.7 1.0
OD2 B:ASP243 4.7 30.8 1.0
OD2 B:ASP204 4.7 29.1 1.0
CB B:ASP243 4.7 27.2 1.0
CG B:GLU203 4.8 30.6 1.0
ND2 B:ASN493 4.9 21.6 1.0
O B:ASP243 4.9 27.1 1.0
N B:HIS245 5.0 25.3 1.0

Magnesium binding site 3 out of 3 in 3kb3

Go back to Magnesium Binding Sites List in 3kb3
Magnesium binding site 3 out of 3 in the Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Abscisic Acid-Bound PYL2 in Complex with HAB1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg999

b:37.7
occ:1.00
OD2 B:ASP243 2.5 30.8 1.0
OG B:SER347 2.7 33.4 1.0
N B:ASP432 2.9 28.6 1.0
OD1 B:ASP346 3.1 31.6 1.0
N B:SER347 3.3 31.0 1.0
CG B:ASP243 3.4 30.2 1.0
CA B:SER347 3.5 31.7 1.0
CB B:ASP243 3.5 27.2 1.0
CA B:SER431 3.5 27.8 1.0
CG B:ASP432 3.5 33.7 1.0
O B:ASP346 3.6 33.0 1.0
C B:ASP346 3.6 32.0 1.0
CB B:SER347 3.6 30.7 1.0
C B:SER431 3.6 28.2 1.0
OD1 B:ASP432 3.6 36.8 1.0
CB B:ASP432 3.7 29.7 1.0
O B:HOH89 3.7 39.3 1.0
CB B:SER431 3.8 28.8 1.0
CA B:ASP432 3.8 28.9 1.0
OD2 B:ASP432 3.9 40.9 1.0
CG2 B:THR328 4.1 27.2 1.0
CG B:ASP346 4.1 31.4 1.0
OG1 B:THR328 4.3 26.4 1.0
MG B:MG997 4.6 47.7 1.0
OD1 B:ASP243 4.6 34.8 1.0
CA B:ASP346 4.6 32.2 1.0
CB B:THR328 4.7 28.7 1.0
N B:SER431 4.8 28.6 1.0
O B:SER431 4.8 25.3 1.0
CB B:ASP346 4.8 33.2 1.0
O B:ALA430 4.9 31.4 1.0
O B:HOH33 4.9 42.8 1.0
C B:ASP432 4.9 28.0 1.0
OG B:SER431 5.0 30.1 1.0
C B:SER347 5.0 32.4 1.0
OD2 B:ASP346 5.0 33.8 1.0
CA B:ASP243 5.0 26.7 1.0
N B:ASP346 5.0 32.5 1.0

Reference:

K.Melcher, L.-M.Ng, X.E.Zhou, F.-F.Soon, Y.Xu, K.-M.Suino-Powell, S.-Y.Park, J.J.Weiner, H.Fujii, V.Chinnusamy, A.Kovach, J.Li, Y.Wang, J.Y.Li, F.C.Peterson, D.R.Jensen, E.-L.Yong, B.F.Volkman, S.R.Cutler, J.-K.Zhu, H.E.Xu. Agate-Latch-Lock Mechanism For Hormone Signalling By Abscisic Acid Receptors Nature V. 462 602 2009.
ISSN: ISSN 0028-0836
Page generated: Wed Aug 14 18:00:58 2024

Last articles

Mg in 7XKW
Mg in 7XMV
Mg in 7XMU
Mg in 7XQX
Mg in 7XQV
Mg in 7XMB
Mg in 7XML
Mg in 7XM0
Mg in 7XMA
Mg in 7XD7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy