Atomistry » Magnesium » PDB 3k9l-3kk1 » 3kb8
Atomistry »
  Magnesium »
    PDB 3k9l-3kk1 »
      3kb8 »

Magnesium in PDB 3kb8: 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp

Enzymatic activity of 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp

All present enzymatic activity of 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp:
2.4.2.8;

Protein crystallography data

The structure of 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp, PDB code: 3kb8 was solved by A.S.Halavaty, G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.08 / 2.09
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.220, 80.477, 120.236, 90.00, 101.24, 90.00
R / Rfree (%) 20.4 / 24.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp (pdb code 3kb8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp, PDB code: 3kb8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3kb8

Go back to Magnesium Binding Sites List in 3kb8
Magnesium binding site 1 out of 2 in the 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg273

b:46.5
occ:1.00
 O2P A:5GP266 2.1 21.7 0.8
OG A:SER104 3.1 30.9 1.0
N A:THR107 3.2 24.3 1.0
P A:5GP266 3.2 22.9 0.8
O A:HOH201 3.4 29.6 1.0
OG1 A:THR107 3.4 30.1 1.0
CB A:THR107 3.5 26.6 1.0
O1P A:5GP266 3.8 22.1 0.8
O3P A:5GP266 3.8 25.9 0.8
N A:LEU106 3.8 23.1 1.0
CB A:LEU106 3.9 24.7 1.0
CA A:THR107 3.9 25.7 1.0
C A:LEU106 4.1 23.6 1.0
CA A:LEU106 4.1 23.9 1.0
CB A:SER104 4.5 26.4 1.0
N A:GLY105 4.5 23.1 1.0
C A:GLY105 4.5 21.9 1.0
O5' A:5GP266 4.5 24.0 0.8
CG2 A:THR107 4.8 26.6 1.0
C5' A:5GP266 4.9 29.3 0.8
CA A:GLY105 4.9 22.1 1.0
N A:LEU108 5.0 27.0 1.0

Magnesium binding site 2 out of 2 in 3kb8

Go back to Magnesium Binding Sites List in 3kb8
Magnesium binding site 2 out of 2 in the 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg272

b:49.7
occ:1.00
 O2P B:5GP267 2.2 27.0 0.9
N B:THR107 2.9 27.4 1.0
OG1 B:THR107 3.2 33.2 1.0
OG B:SER104 3.3 27.0 1.0
P B:5GP267 3.3 29.6 0.9
CB B:THR107 3.4 28.8 1.0
O B:HOH219 3.5 31.9 1.0
O3P B:5GP267 3.5 25.0 0.9
CB B:LEU106 3.6 27.2 1.0
N B:LEU106 3.6 26.3 1.0
CA B:THR107 3.7 28.9 1.0
C B:LEU106 3.8 26.4 1.0
CA B:LEU106 3.9 26.4 1.0
O1P B:5GP267 4.3 21.4 0.9
O5' B:5GP267 4.4 27.7 0.9
C B:GLY105 4.5 26.8 1.0
CG B:LEU106 4.6 29.2 1.0
N B:GLY105 4.7 25.2 1.0
CB B:SER104 4.7 26.4 1.0
CG2 B:THR107 4.8 30.9 1.0
CD1 B:LEU106 4.9 30.5 1.0
C B:THR107 4.9 29.4 1.0
O B:LEU106 4.9 26.6 1.0
N B:LEU108 5.0 28.8 1.0

Reference:

A.S.Halavaty, G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papazisi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.09 Angstrom Resolution Structure of A Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor' in Complex with Gmp To Be Published.
Page generated: Mon Dec 14 08:21:57 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy