Atomistry » Magnesium » PDB 3k9l-3kk1 » 3kd3
Atomistry »
  Magnesium »
    PDB 3k9l-3kk1 »
      3kd3 »

Magnesium in PDB 3kd3: Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4

Protein crystallography data

The structure of Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 3kd3 was solved by B.Nocek, M.Zhou, S.Peterson, W.Anderson, A.Joachimiak, Csgid, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.34 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.574, 78.798, 87.918, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 18.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4 (pdb code 3kd3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 3kd3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3kd3

Go back to Magnesium Binding Sites List in 3kd3
Magnesium binding site 1 out of 2 in the Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:16.1
occ:1.00
OD2 A:ASP7 2.1 22.6 1.0
O A:HOH217 2.2 11.0 1.0
OD1 A:ASP169 2.3 10.9 1.0
O A:ASP9 2.3 6.2 1.0
O A:HOH362 2.6 24.1 1.0
CG A:ASP169 3.2 8.7 1.0
CG A:ASP7 3.2 11.1 1.0
C A:ASP9 3.3 7.2 1.0
OD2 A:ASP169 3.4 10.3 1.0
CB A:ASP9 3.8 7.4 1.0
CB A:ASP7 3.9 8.6 1.0
OG1 A:THR11 4.0 7.2 1.0
CA A:ASP9 4.0 5.7 1.0
OD1 A:ASP7 4.1 19.7 1.0
N A:ASP9 4.2 5.9 1.0
O A:HOH356 4.3 14.3 1.0
O A:HOH295 4.3 21.2 1.0
O A:HOH265 4.3 10.6 1.0
N A:SER10 4.4 6.1 1.0
CB A:SER10 4.4 8.1 1.0
OE2 A:GLU16 4.4 16.4 1.0
OD2 A:ASP173 4.5 14.8 1.0
N A:ASP169 4.5 7.1 1.0
CB A:ASP169 4.6 7.5 1.0
SE A:MSE44 4.6 15.4 0.8
CA A:SER10 4.7 6.6 1.0
N A:GLY170 4.8 7.8 1.0
C A:SER10 4.9 6.8 1.0
N A:THR11 4.9 6.6 1.0
C A:PHE8 4.9 7.0 1.0
CB A:THR11 5.0 6.5 1.0

Magnesium binding site 2 out of 2 in 3kd3

Go back to Magnesium Binding Sites List in 3kd3
Magnesium binding site 2 out of 2 in the Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:14.6
occ:1.00
OD1 B:ASP169 2.2 10.6 1.0
OD2 B:ASP7 2.2 14.5 1.0
O B:ASP9 2.2 7.9 1.0
O B:HOH284 2.3 11.8 1.0
O B:HOH336 2.6 21.5 1.0
CG B:ASP169 3.1 8.3 1.0
CG B:ASP7 3.2 11.7 1.0
C B:ASP9 3.3 7.2 1.0
OD2 B:ASP169 3.4 9.8 1.0
CB B:ASP9 3.8 6.4 1.0
CB B:ASP7 3.8 8.2 1.0
CA B:ASP9 4.0 6.8 1.0
OG1 B:THR11 4.1 6.6 1.0
O B:HOH247 4.1 7.7 1.0
OD1 B:ASP7 4.1 13.1 1.0
N B:ASP9 4.2 6.6 1.0
O B:HOH324 4.3 14.3 1.0
N B:SER10 4.3 7.2 1.0
OE2 B:GLU16 4.4 13.5 1.0
CB B:SER10 4.4 6.5 1.0
OD2 B:ASP173 4.5 11.3 1.0
CB B:ASP169 4.5 5.7 1.0
N B:ASP169 4.5 6.6 1.0
CA B:SER10 4.7 7.4 1.0
SE B:MSE44 4.7 14.8 0.8
NZ B:LYS149 4.8 21.1 1.0
C B:SER10 4.8 7.0 1.0
N B:GLY170 4.9 6.8 1.0
N B:THR11 4.9 7.4 1.0
C B:PHE8 4.9 5.6 1.0
O B:HOH344 4.9 20.7 1.0
CB B:THR11 5.0 7.4 1.0
CA B:ASP169 5.0 6.1 1.0

Reference:

B.Nocek, M.Zhou, S.Peterson, W.Anderson, A.Joachimiak, Csgid. Crystal Structure of A Phosphoserine Phosphohydrolase-Like Protein From Francisella Tularensis Subsp. Tularensis SCHUS4 To Be Published.
Page generated: Wed Aug 14 18:02:27 2024

Last articles

Mg in 7W4E
Mg in 7W4C
Mg in 7W4D
Mg in 7W4A
Mg in 7W3E
Mg in 7W49
Mg in 7W48
Mg in 7W32
Mg in 7W47
Mg in 7W35
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy