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Magnesium in PDB 3khq: Crystal Structure of Murine Ig-Beta (CD79B) in the Monomeric Form

Protein crystallography data

The structure of Crystal Structure of Murine Ig-Beta (CD79B) in the Monomeric Form, PDB code: 3khq was solved by S.Radaev, P.D.Sun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.87 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 35.630, 79.720, 34.320, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 19.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Murine Ig-Beta (CD79B) in the Monomeric Form (pdb code 3khq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Murine Ig-Beta (CD79B) in the Monomeric Form, PDB code: 3khq:

Magnesium binding site 1 out of 1 in 3khq

Go back to Magnesium Binding Sites List in 3khq
Magnesium binding site 1 out of 1 in the Crystal Structure of Murine Ig-Beta (CD79B) in the Monomeric Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Murine Ig-Beta (CD79B) in the Monomeric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1

b:31.8
occ:1.00
O A:HOH172 2.0 35.4 1.0
O A:HOH171 2.1 29.7 1.0
OB1 A:FLC800 2.1 35.1 1.0
OE1 A:GLU138 2.2 33.0 1.0
OG1 A:FLC800 2.2 29.2 1.0
OHB A:FLC800 2.2 30.6 1.0
CBC A:FLC800 2.9 45.3 1.0
CB A:FLC800 3.0 35.9 1.0
CGC A:FLC800 3.2 29.1 1.0
CD A:GLU138 3.4 52.0 1.0
CG A:FLC800 3.6 33.6 1.0
O A:HOH161 4.0 35.2 1.0
OE2 A:GLU138 4.1 39.6 1.0
OB2 A:FLC800 4.1 47.7 1.0
CB A:GLU138 4.2 24.0 1.0
OA1 A:FLC800 4.2 51.5 1.0
OG2 A:FLC800 4.3 29.4 1.0
CG A:GLU138 4.4 22.3 1.0
CA A:FLC800 4.4 38.7 1.0
CD1 A:ILE117 4.7 48.4 1.0
CAC A:FLC800 4.8 53.5 1.0

Reference:

S.Radaev, Z.Zou, P.Tolar, K.Nguyen, A.Nguyen, P.D.Krueger, N.Stutzman, S.Pierce, P.D.Sun. Structural and Functional Studies of Igalphabeta and Its Assembly with the B Cell Antigen Receptor. Structure V. 18 934 2010.
ISSN: ISSN 0969-2126
PubMed: 20696394
DOI: 10.1016/J.STR.2010.04.019
Page generated: Wed Aug 14 18:08:10 2024

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